Analysis of interatomic Contacts of Structural Units in PDB entry:
9JXU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JXU entry

There are 2 chains in PDB entry 9JXU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 5TYR 313
B
 HIS 6TYR 313
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 9JXU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 18Right-handed 310
Helix 2
AA2
A
42 45Right-handed 310
Helix 3
AA3
A
49 65Right-handed alpha
Helix 4
AA4
A
83 94Right-handed alpha
Helix 5
AA5
A
106 116Right-handed alpha
Helix 6
AA6
A
124 126Right-handed 310
Helix 7
AA7
A
127 144Right-handed alpha
Helix 8
AA8
A
162 172Right-handed alpha
Helix 9
AA9
A
187 201Right-handed alpha
Helix 10
AB1
A
251 267Right-handed alpha
Helix 11
AB2
A
271 289Right-handed alpha
Helix 12
AB3
A
301 306Right-handed 310
Helix 13
AB4
B
13 18Right-handed 310
Helix 14
AB5
B
42 45Right-handed 310
Helix 15
AB6
B
49 65Right-handed alpha
Helix 16
AB7
B
79 94Right-handed alpha
Helix 17
AB8
B
108 116Right-handed alpha
Helix 18
AB9
B
124 127Right-handed 310
Helix 19
AC1
B
128 144Right-handed alpha
Helix 20
AC2
B
161 172Right-handed alpha
Helix 21
AC3
B
187 201Right-handed alpha
Helix 22
AC4
B
251 267Right-handed alpha
Helix 23
AC5
B
271 289Right-handed alpha
Helix 24
AC6
B
301 306Right-handed 310
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There are 4 sheets in PDB entry 9JXU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 11first strand
Strand 2
B
23 25parallel
Strand 3
B
36 40anti-parallel
Strand 4
B
293 297parallel
Strand 5
B
179 183parallel
Strand 6
B
205 211parallel
Strand 7
B
246 250parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
246 250first strand
Strand 2
A
205 211parallel
Strand 3
A
179 183parallel
Strand 4
A
293 297parallel
Strand 5
A
36 40parallel
Strand 6
A
23 25anti-parallel
Strand 7
B
10 11parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 77first strand
Strand 2
A
96 102parallel
Strand 3
A
119 123parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
73 77first strand
Strand 2
B
96 102parallel
Strand 3
B
119 123parallel
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