Analysis of interatomic Contacts of Structural Units in PDB entry:
9JXW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JXW entry

There are 2 chains in PDB entry 9JXW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLN 420
B
 MET 1ALA 418
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 9JXW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 25Right-handed alpha
Helix 2
AA2
A
46 54Right-handed alpha
Helix 3
AA3
A
68 76Right-handed alpha
Helix 4
AA4
A
91 99Right-handed alpha
Helix 5
AA5
A
158 171Right-handed alpha
Helix 6
AA6
A
186 197Right-handed alpha
Helix 7
AA7
A
203 214Right-handed alpha
Helix 8
AA8
A
220 228Right-handed alpha
Helix 9
AA9
A
229 236Right-handed alpha
Helix 10
AB1
A
247 259Right-handed alpha
Helix 11
AB2
A
266 283Right-handed alpha
Helix 12
AB3
A
298 310Right-handed alpha
Helix 13
AB4
A
320 330Right-handed alpha
Helix 14
AB5
A
348 361Right-handed alpha
Helix 15
AB6
A
399 402Right-handed 310
Helix 16
AB7
A
403 419Right-handed alpha
Helix 17
AB8
B
11 25Right-handed alpha
Helix 18
AB9
B
46 54Right-handed alpha
Helix 19
AC1
B
68 76Right-handed alpha
Helix 20
AC2
B
90 99Right-handed alpha
Helix 21
AC3
B
113 117Right-handed 310
Helix 22
AC4
B
158 171Right-handed alpha
Helix 23
AC5
B
186 197Right-handed alpha
Helix 24
AC6
B
203 213Right-handed alpha
Helix 25
AC7
B
220 227Right-handed alpha
Helix 26
AC8
B
229 236Right-handed alpha
Helix 27
AC9
B
247 259Right-handed alpha
Helix 28
AD1
B
266 283Right-handed alpha
Helix 29
AD2
B
298 308Right-handed alpha
Helix 30
AD3
B
320 330Right-handed alpha
Helix 31
AD4
B
348 361Right-handed alpha
Helix 32
AD5
B
399 402Right-handed 310
Helix 33
AD6
B
403 418Right-handed alpha
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There are 8 sheets in PDB entry 9JXW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 64first strand
Strand 2
A
31 36parallel
Strand 3
A
3 7parallel
Strand 4
A
83 85parallel
Strand 5
A
105 111parallel
Strand 6
A
129 133anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
154 157first strand
Strand 2
A
393 397anti-parallel
Strand 3
A
377 384anti-parallel
Strand 4
A
371 374anti-parallel
Strand 5
A
175 177anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 201first strand
Strand 2
A
340 342anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 219first strand
Strand 2
A
314 318parallel
Strand 3
A
333 336parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 64first strand
Strand 2
B
31 36parallel
Strand 3
B
3 7parallel
Strand 4
B
83 85parallel
Strand 5
B
105 111parallel
Strand 6
B
129 133anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
154 157first strand
Strand 2
B
393 397anti-parallel
Strand 3
B
377 384anti-parallel
Strand 4
B
371 374anti-parallel
Strand 5
B
175 178anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
199 201first strand
Strand 2
B
340 342anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
216 219first strand
Strand 2
B
314 318parallel
Strand 3
B
333 336parallel
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