Analysis of interatomic Contacts of Structural Units in PDB entry:
9JXX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9JXX entry

There are 4 chains in PDB entry 9JXX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	LEU 2	ALA 418
D	MET 1	ALA 418
Y	A 1	A 4
A	MET 1	TYR 404

There are 73 helices in PDB entry 9JXX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	11	24	Right-handed alpha
Helix 2	AA2	B	46	53	Right-handed alpha
Helix 3	AA3	B	68	77	Right-handed alpha
Helix 4	AA4	B	90	100	Right-handed alpha
Helix 5	AA5	B	113	117	Right-handed 310
Helix 6	AA6	B	125	127	Right-handed 310
Helix 7	AA7	B	158	170	Right-handed alpha
Helix 8	AA8	B	171	173	Right-handed 310
Helix 9	AA9	B	186	196	Right-handed alpha
Helix 10	AB1	B	203	213	Right-handed alpha
Helix 11	AB2	B	220	228	Right-handed alpha
Helix 12	AB3	B	230	235	Right-handed alpha
Helix 13	AB4	B	247	259	Right-handed alpha
Helix 14	AB5	B	268	283	Right-handed alpha
Helix 15	AB6	B	295	310	Right-handed alpha
Helix 16	AB7	B	320	330	Right-handed alpha
Helix 17	AB8	B	348	361	Right-handed alpha
Helix 18	AB9	B	399	402	Right-handed 310
Helix 19	AC1	B	403	417	Right-handed alpha
Helix 20	AC2	D	11	24	Right-handed alpha
Helix 21	AC3	D	46	53	Right-handed alpha
Helix 22	AC4	D	68	78	Right-handed alpha
Helix 23	AC5	D	90	101	Right-handed alpha
Helix 24	AC6	D	113	117	Right-handed 310
Helix 25	AC7	D	125	127	Right-handed 310
Helix 26	AC8	D	158	170	Right-handed alpha
Helix 27	AC9	D	186	196	Right-handed alpha
Helix 28	AD1	D	203	213	Right-handed alpha
Helix 29	AD2	D	220	228	Right-handed alpha
Helix 30	AD3	D	230	235	Right-handed alpha
Helix 31	AD4	D	247	259	Right-handed alpha
Helix 32	AD5	D	266	283	Right-handed alpha
Helix 33	AD6	D	295	308	Right-handed alpha
Helix 34	AD7	D	320	330	Right-handed alpha
Helix 35	AD8	D	348	362	Right-handed alpha
Helix 36	AD9	D	399	402	Right-handed 310
Helix 37	AE1	D	403	417	Right-handed alpha
Helix 38	AE2	A	11	24	Right-handed alpha
Helix 39	AE3	A	47	53	Right-handed alpha
Helix 40	AE4	A	68	76	Right-handed alpha
Helix 41	AE5	A	90	101	Right-handed alpha
Helix 42	AE6	A	113	117	Right-handed 310
Helix 43	AE7	A	125	127	Right-handed 310
Helix 44	AE8	A	158	171	Right-handed alpha
Helix 45	AE9	A	186	196	Right-handed alpha
Helix 46	AF1	A	203	213	Right-handed alpha
Helix 47	AF2	A	220	228	Right-handed alpha
Helix 48	AF3	A	230	235	Right-handed alpha
Helix 49	AF4	A	247	259	Right-handed alpha
Helix 50	AF5	A	267	283	Right-handed alpha
Helix 51	AF6	A	295	310	Right-handed alpha
Helix 52	AF7	A	320	329	Right-handed alpha
Helix 53	AF8	A	348	362	Right-handed alpha
Helix 54	AF9	A	399	402	Right-handed 310
Helix 55	AG1	A	403	417	Right-handed alpha
Helix 56	AG2	C	11	24	Right-handed alpha
Helix 57	AG3	C	45	53	Right-handed alpha
Helix 58	AG4	C	68	78	Right-handed alpha
Helix 59	AG5	C	90	101	Right-handed alpha
Helix 60	AG6	C	113	117	Right-handed 310
Helix 61	AG7	C	125	127	Right-handed 310
Helix 62	AG8	C	158	171	Right-handed alpha
Helix 63	AG9	C	186	196	Right-handed alpha
Helix 64	AH1	C	203	213	Right-handed alpha
Helix 65	AH2	C	220	228	Right-handed alpha
Helix 66	AH3	C	230	235	Right-handed alpha
Helix 67	AH4	C	247	259	Right-handed alpha
Helix 68	AH5	C	266	283	Right-handed alpha
Helix 69	AH6	C	295	308	Right-handed alpha
Helix 70	AH7	C	320	330	Right-handed alpha
Helix 71	AH8	C	348	363	Right-handed alpha
Helix 72	AH9	C	399	402	Right-handed 310
Helix 73	AI1	C	403	418	Right-handed alpha

There are 20 sheets in PDB entry 9JXX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	59	64	first strand
Strand 2	B	31	36	parallel
Strand 3	B	3	8	parallel
Strand 4	B	83	85	parallel
Strand 5	B	105	111	parallel
Strand 6	B	129	133	anti-parallel
Strand 7	B	139	140	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	154	157	first strand
Strand 2	B	393	397	anti-parallel
Strand 3	B	377	384	anti-parallel
Strand 4	B	370	374	anti-parallel
Strand 5	B	175	178	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	199	201	first strand
Strand 2	B	340	342	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	216	219	first strand
Strand 2	B	314	318	parallel
Strand 3	B	333	336	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	236	237	first strand
Strand 2	B	241	242	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	59	64	first strand
Strand 2	D	29	36	parallel
Strand 3	D	2	8	parallel
Strand 4	D	83	85	parallel
Strand 5	D	105	111	parallel
Strand 6	D	129	133	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	154	157	first strand
Strand 2	D	393	397	anti-parallel
Strand 3	D	377	384	anti-parallel
Strand 4	D	371	374	anti-parallel
Strand 5	D	175	178	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	199	201	first strand
Strand 2	D	340	342	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	216	219	first strand
Strand 2	D	314	318	parallel
Strand 3	D	333	336	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	236	237	first strand
Strand 2	D	241	242	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	64	first strand
Strand 2	A	31	36	parallel
Strand 3	A	3	7	parallel
Strand 4	A	83	85	parallel
Strand 5	A	105	111	parallel
Strand 6	A	129	133	anti-parallel
Strand 7	A	139	140	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	154	157	first strand
Strand 2	A	391	397	anti-parallel
Strand 3	A	377	386	anti-parallel
Strand 4	A	370	374	anti-parallel
Strand 5	A	175	178	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	199	201	first strand
Strand 2	A	340	342	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	216	219	first strand
Strand 2	A	314	318	parallel
Strand 3	A	333	336	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	236	237	first strand
Strand 2	A	241	242	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	64	first strand
Strand 2	C	31	36	parallel
Strand 3	C	3	8	parallel
Strand 4	C	83	85	parallel
Strand 5	C	105	111	parallel
Strand 6	C	129	133	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	154	157	first strand
Strand 2	C	393	397	anti-parallel
Strand 3	C	377	384	anti-parallel
Strand 4	C	371	374	anti-parallel
Strand 5	C	175	178	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	199	201	first strand
Strand 2	C	340	342	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	216	219	first strand
Strand 2	C	314	318	parallel
Strand 3	C	333	336	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	236	237	first strand
Strand 2	C	241	242	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9JXX

Analysis of interatomic Contacts of Structural Units in PDB entry:
9JXX