Analysis of interatomic Contacts of Structural Units in PDB entry:
9JXZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JXZ entry

There are 8 chains in PDB entry 9JXZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
a
 LEU 26SER 56
b
 LEU 27PHE 55
d
 PHE 22ALA 126
e
 GLN 33LYS 153
f
 GLN 33ASN 154
g
 LYS 26ASP 140
m
 VAL 254PHE 289
n
 ASP 251THR 288
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 9JXZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
a
30 54Right-handed alpha
Helix 2
AA2
b
28 55Right-handed alpha
Helix 3
AA3
d
100 126Right-handed alpha
Helix 4
AA4
e
126 153Right-handed alpha
Helix 5
AA5
f
104 108Right-handed 310
Helix 6
AA6
f
126 153Right-handed alpha
Helix 7
AA7
g
76 80Right-handed 310
Helix 8
AA8
g
111 140Right-handed alpha
Helix 9
AA9
m
258 289Right-handed alpha
Helix 10
AB1
n
252 288Right-handed alpha
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There are 9 sheets in PDB entry 9JXZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
d
27 28first strand
Strand 2
d
33 34anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
d
85 86first strand
Strand 2
e
110 116parallel
Strand 3
d
89 91parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
d
85 86first strand
Strand 2
e
110 116parallel
Strand 3
e
95 100anti-parallel
Strand 4
e
57 61anti-parallel
Strand 5
e
64 66anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
d
96 98first strand
Strand 2
e
122 124anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
e
37 41first strand
Strand 2
e
44 48anti-parallel
Strand 3
e
81 84anti-parallel
Strand 4
e
75 77anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
f
38 41first strand
Strand 2
f
44 48anti-parallel
Strand 3
f
81 84anti-parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
f
64 65first strand
Strand 2
f
57 61anti-parallel
Strand 3
f
94 100anti-parallel
Strand 4
f
112 116anti-parallel
Strand 5
g
93 102parallel
Strand 6
g
84 88anti-parallel
Strand 7
g
54 55anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
f
122 124first strand
Strand 2
g
107 109anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
g
31 34first strand
Strand 2
g
42 46anti-parallel
Strand 3
g
71 75anti-parallel
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