Analysis of interatomic Contacts of Structural Units in PDB entry:
9JY1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9JY1 entry

There are 20 chains in PDB entry 9JY1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
P	GLU 1	PRO 221
O	ASP 1	SER 213
a	LEU 26	SER 56
b	LEU 27	PHE 55
d	PHE 22	ALA 126
e	GLN 33	LYS 153
f	GLN 33	ASN 154
g	LYS 26	ASP 140
m	VAL 254	PHE 289
n	ASP 251	THR 288
R	GLU 1	PRO 221
Q	ASP 1	SER 213
A	LEU 26	SER 56
B	LEU 27	PHE 55
D	PHE 22	ALA 126
E	GLN 33	LYS 153
F	GLN 33	ASN 154
G	LYS 26	ASP 140
M	VAL 254	PHE 289
N	ASP 251	THR 288

There are 28 helices in PDB entry 9JY1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	P	28	32	Right-handed 310
Helix 2	AA2	P	87	91	Right-handed 310
Helix 3	AA3	O	122	129	Right-handed alpha
Helix 4	AA4	O	184	189	Right-handed alpha
Helix 5	AA5	a	29	54	Right-handed alpha
Helix 6	AA6	b	28	55	Right-handed alpha
Helix 7	AA7	d	64	66	Right-handed 310
Helix 8	AA8	d	100	126	Right-handed alpha
Helix 9	AA9	e	126	153	Right-handed alpha
Helix 10	AB1	f	126	154	Right-handed alpha
Helix 11	AB2	g	76	80	Right-handed 310
Helix 12	AB3	g	111	140	Right-handed alpha
Helix 13	AB4	m	256	289	Right-handed alpha
Helix 14	AB5	n	252	288	Right-handed alpha
Helix 15	AB6	R	28	32	Right-handed 310
Helix 16	AB7	R	87	91	Right-handed 310
Helix 17	AB8	Q	122	129	Right-handed alpha
Helix 18	AB9	Q	184	189	Right-handed alpha
Helix 19	AC1	A	29	54	Right-handed alpha
Helix 20	AC2	B	28	55	Right-handed alpha
Helix 21	AC3	D	64	66	Right-handed 310
Helix 22	AC4	D	100	126	Right-handed alpha
Helix 23	AC5	E	126	153	Right-handed alpha
Helix 24	AC6	F	126	154	Right-handed alpha
Helix 25	AC7	G	76	80	Right-handed 310
Helix 26	AC8	G	111	140	Right-handed alpha
Helix 27	AC9	M	256	289	Right-handed alpha
Helix 28	AD1	N	252	288	Right-handed alpha

There are 36 sheets in PDB entry 9JY1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	3	6	first strand
Strand 2	P	18	25	anti-parallel
Strand 3	P	78	83	anti-parallel
Strand 4	P	68	73	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	10	12	first strand
Strand 2	P	116	120	parallel
Strand 3	P	93	99	anti-parallel
Strand 4	P	33	40	anti-parallel
Strand 5	P	44	51	anti-parallel
Strand 6	P	58	60	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	10	12	first strand
Strand 2	P	116	120	parallel
Strand 3	P	93	99	anti-parallel
Strand 4	P	109	112	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	129	133	first strand
Strand 2	P	148	154	anti-parallel
Strand 3	P	184	189	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	160	163	first strand
Strand 2	P	203	208	anti-parallel
Strand 3	P	213	218	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	4	5	first strand
Strand 2	O	19	25	anti-parallel
Strand 3	O	70	75	anti-parallel
Strand 4	O	62	67	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	10	12	first strand
Strand 2	O	102	105	parallel
Strand 3	O	85	90	anti-parallel
Strand 4	O	33	38	anti-parallel
Strand 5	O	44	49	anti-parallel
Strand 6	O	53	54	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	118	119	first strand
Strand 2	O	130	135	anti-parallel
Strand 3	O	176	183	anti-parallel
Strand 4	O	160	164	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	154	155	first strand
Strand 2	O	147	151	anti-parallel
Strand 3	O	192	197	anti-parallel
Strand 4	O	206	211	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	26	29	first strand
Strand 2	d	32	36	anti-parallel
Strand 3	d	57	62	anti-parallel
Strand 4	d	50	51	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	42	46	first strand
Strand 2	d	68	73	anti-parallel
Strand 3	d	84	91	anti-parallel
Strand 4	e	110	116	parallel
Strand 5	e	94	100	anti-parallel
Strand 6	e	57	61	anti-parallel
Strand 7	e	64	66	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	96	98	first strand
Strand 2	e	122	124	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	37	41	first strand
Strand 2	e	44	48	anti-parallel
Strand 3	e	81	84	anti-parallel
Strand 4	e	75	78	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	37	41	first strand
Strand 2	f	44	48	anti-parallel
Strand 3	f	81	84	anti-parallel
Strand 4	f	76	77	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	64	65	first strand
Strand 2	f	58	61	anti-parallel
Strand 3	f	96	99	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	112	116	first strand
Strand 2	g	93	102	parallel
Strand 3	g	83	88	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	31	34	first strand
Strand 2	g	42	46	anti-parallel
Strand 3	g	71	75	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	55	57	first strand
Strand 2	g	60	63	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	3	6	first strand
Strand 2	R	18	25	anti-parallel
Strand 3	R	78	83	anti-parallel
Strand 4	R	68	73	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	10	12	first strand
Strand 2	R	116	120	parallel
Strand 3	R	93	99	anti-parallel
Strand 4	R	33	40	anti-parallel
Strand 5	R	44	51	anti-parallel
Strand 6	R	58	60	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	10	12	first strand
Strand 2	R	116	120	parallel
Strand 3	R	93	99	anti-parallel
Strand 4	R	109	112	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	129	133	first strand
Strand 2	R	148	154	anti-parallel
Strand 3	R	184	189	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	160	163	first strand
Strand 2	R	203	208	anti-parallel
Strand 3	R	213	218	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	4	5	first strand
Strand 2	Q	19	25	anti-parallel
Strand 3	Q	70	75	anti-parallel
Strand 4	Q	62	67	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	10	12	first strand
Strand 2	Q	102	105	parallel
Strand 3	Q	85	90	anti-parallel
Strand 4	Q	33	38	anti-parallel
Strand 5	Q	44	49	anti-parallel
Strand 6	Q	53	54	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	118	119	first strand
Strand 2	Q	130	135	anti-parallel
Strand 3	Q	176	183	anti-parallel
Strand 4	Q	160	164	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	154	155	first strand
Strand 2	Q	147	151	anti-parallel
Strand 3	Q	192	197	anti-parallel
Strand 4	Q	206	211	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	26	29	first strand
Strand 2	D	32	36	anti-parallel
Strand 3	D	57	62	anti-parallel
Strand 4	D	50	51	anti-parallel

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There are 7 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	42	46	first strand
Strand 2	D	68	73	anti-parallel
Strand 3	D	84	91	anti-parallel
Strand 4	E	110	116	parallel
Strand 5	E	94	100	anti-parallel
Strand 6	E	57	61	anti-parallel
Strand 7	E	64	66	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	96	98	first strand
Strand 2	E	122	124	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	37	41	first strand
Strand 2	E	44	48	anti-parallel
Strand 3	E	81	84	anti-parallel
Strand 4	E	75	78	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	37	41	first strand
Strand 2	F	44	48	anti-parallel
Strand 3	F	81	84	anti-parallel
Strand 4	F	76	77	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	64	65	first strand
Strand 2	F	58	61	anti-parallel
Strand 3	F	96	99	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	112	116	first strand
Strand 2	G	93	102	parallel
Strand 3	G	83	88	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	31	34	first strand
Strand 2	G	42	46	anti-parallel
Strand 3	G	71	75	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	55	57	first strand
Strand 2	G	60	63	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9JY1

Analysis of interatomic Contacts of Structural Units in PDB entry:
9JY1