Analysis of interatomic Contacts of Structural Units in PDB entry:
9JY2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9JY2 entry

There are 10 chains in PDB entry 9JY2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
a	LEU 26	SER 56
b	LEU 27	PHE 55
d	PHE 22	ALA 126
e	GLN 33	LYS 153
f	GLN 33	ASN 154
g	LYS 26	ASP 140
m	VAL 254	PHE 289
n	ASP 251	THR 288
A	ASP 1	LEU 104
B	GLU 1	PHE 121

There are 14 helices in PDB entry 9JY2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	a	29	54	Right-handed alpha
Helix 2	AA2	b	28	55	Right-handed alpha
Helix 3	AA3	d	64	66	Right-handed 310
Helix 4	AA4	d	100	126	Right-handed alpha
Helix 5	AA5	e	88	93	Right-handed alpha
Helix 6	AA6	e	126	153	Right-handed alpha
Helix 7	AA7	f	126	154	Right-handed alpha
Helix 8	AA8	g	76	80	Right-handed 310
Helix 9	AA9	g	111	140	Right-handed alpha
Helix 10	AB1	m	256	289	Right-handed alpha
Helix 11	AB2	n	252	288	Right-handed alpha
Helix 12	AB3	B	28	30	Right-handed 310
Helix 13	AB4	B	62	65	Right-handed 310
Helix 14	AB5	B	87	91	Right-handed 310

There are 15 sheets in PDB entry 9JY2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	26	29	first strand
Strand 2	d	32	36	anti-parallel
Strand 3	d	57	62	anti-parallel
Strand 4	d	50	51	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	41	46	first strand
Strand 2	d	68	73	anti-parallel
Strand 3	d	84	91	anti-parallel
Strand 4	e	110	116	parallel
Strand 5	e	94	100	anti-parallel
Strand 6	e	57	61	anti-parallel
Strand 7	e	64	66	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	96	98	first strand
Strand 2	e	122	124	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	37	41	first strand
Strand 2	e	44	48	anti-parallel
Strand 3	e	81	84	anti-parallel
Strand 4	e	75	78	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	37	41	first strand
Strand 2	f	44	48	anti-parallel
Strand 3	f	82	84	anti-parallel
Strand 4	f	76	77	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	64	66	first strand
Strand 2	f	58	61	anti-parallel
Strand 3	f	96	99	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	112	116	first strand
Strand 2	g	98	102	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	122	124	first strand
Strand 2	g	107	109	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	31	34	first strand
Strand 2	g	42	46	anti-parallel
Strand 3	g	72	75	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	60	63	first strand
Strand 2	g	55	57	anti-parallel
Strand 3	g	85	88	anti-parallel
Strand 4	g	93	94	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	6	first strand
Strand 2	A	19	25	anti-parallel
Strand 3	A	70	75	anti-parallel
Strand 4	A	64	67	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	54	first strand
Strand 2	A	44	49	anti-parallel
Strand 3	A	33	38	anti-parallel
Strand 4	A	85	90	anti-parallel
Strand 5	A	102	103	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	6	first strand
Strand 2	B	17	25	anti-parallel
Strand 3	B	78	84	anti-parallel
Strand 4	B	68	73	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	60	first strand
Strand 2	B	44	51	anti-parallel
Strand 3	B	32	40	anti-parallel
Strand 4	B	92	100	anti-parallel
Strand 5	B	111	112	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	60	first strand
Strand 2	B	44	51	anti-parallel
Strand 3	B	32	40	anti-parallel
Strand 4	B	92	100	anti-parallel
Strand 5	B	116	118	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9JY2

Analysis of interatomic Contacts of Structural Units in PDB entry:
9JY2