Analysis of interatomic Contacts of Structural Units in PDB entry:
9JYX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JYX entry

There are 3 chains in PDB entry 9JYX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 423ILE 879
B
 CYS 424GLU 880
C
 ALA 425GLU 880
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 9JYX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
448 468Right-handed alpha
Helix 2
AA2
A
469 472Right-handed 310
Helix 3
AA3
A
486 496Right-handed alpha
Helix 4
AA4
A
516 524Right-handed alpha
Helix 5
AA5
A
527 548Right-handed alpha
Helix 6
AA6
A
564 576Right-handed alpha
Helix 7
AA7
A
699 711Right-handed alpha
Helix 8
AA8
A
740 745Right-handed alpha
Helix 9
AA9
A
746 750Right-handed 310
Helix 10
AB1
A
771 779Right-handed alpha
Helix 11
AB2
A
780 783Right-handed 310
Helix 12
AB3
A
824 832Right-handed alpha
Helix 13
AB4
A
845 851Right-handed 310
Helix 14
AB5
A
852 854Right-handed 310
Helix 15
AB6
A
855 865Right-handed alpha
Helix 16
AB7
A
867 879Right-handed alpha
Helix 17
AB8
B
446 468Right-handed alpha
Helix 18
AB9
B
469 472Right-handed 310
Helix 19
AC1
B
486 496Right-handed alpha
Helix 20
AC2
B
504 509Right-handed alpha
Helix 21
AC3
B
516 524Right-handed alpha
Helix 22
AC4
B
527 547Right-handed alpha
Helix 23
AC5
B
566 577Right-handed alpha
Helix 24
AC6
B
699 711Right-handed alpha
Helix 25
AC7
B
740 745Right-handed alpha
Helix 26
AC8
B
746 751Right-handed 310
Helix 27
AC9
B
771 779Right-handed alpha
Helix 28
AD1
B
825 830Right-handed alpha
Helix 29
AD2
B
845 851Right-handed 310
Helix 30
AD3
B
852 854Right-handed 310
Helix 31
AD4
B
855 864Right-handed alpha
Helix 32
AD5
B
867 879Right-handed alpha
Helix 33
AD6
C
448 468Right-handed alpha
Helix 34
AD7
C
486 496Right-handed alpha
Helix 35
AD8
C
516 524Right-handed alpha
Helix 36
AD9
C
527 548Right-handed alpha
Helix 37
AE1
C
566 577Right-handed alpha
Helix 38
AE2
C
699 711Right-handed alpha
Helix 39
AE3
C
740 745Right-handed alpha
Helix 40
AE4
C
746 751Right-handed 310
Helix 41
AE5
C
771 779Right-handed alpha
Helix 42
AE6
C
845 851Right-handed 310
Helix 43
AE7
C
852 854Right-handed 310
Helix 44
AE8
C
855 865Right-handed alpha
Helix 45
AE9
C
867 879Right-handed alpha
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There are 3 sheets in PDB entry 9JYX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
475 481first strand
Strand 2
A
428 434parallel
Strand 3
A
558 563parallel
Strand 4
A
690 696parallel
Strand 5
A
726 731parallel
Strand 6
A
839 842parallel
Strand 7
A
754 755parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
475 481first strand
Strand 2
B
428 434parallel
Strand 3
B
558 563parallel
Strand 4
B
690 696parallel
Strand 5
B
723 731parallel
Strand 6
B
839 842parallel
Strand 7
B
754 755parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
475 481first strand
Strand 2
C
428 434parallel
Strand 3
C
558 564parallel
Strand 4
C
690 696parallel
Strand 5
C
726 731parallel
Strand 6
C
839 842parallel
Strand 7
C
754 755parallel
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