Analysis of interatomic Contacts of Structural Units in PDB entry:
9JZP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9JZP entry

There are 3 chains in PDB entry 9JZP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 915	SER 1175
B	ASN 914	ALA 1171
C	ARG 913	VAL 1144

There are 26 helices in PDB entry 9JZP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	985	989	Right-handed 310
Helix 2	AA2	A	1046	1057	Right-handed alpha
Helix 3	AA3	A	1071	1082	Right-handed alpha
Helix 4	AA4	A	1098	1113	Right-handed alpha
Helix 5	AA5	A	1126	1134	Right-handed alpha
Helix 6	AA6	A	1137	1139	Right-handed 310
Helix 7	AA7	A	1147	1153	Right-handed alpha
Helix 8	AA8	A	1161	1172	Right-handed alpha
Helix 9	AA9	B	941	945	Right-handed 310
Helix 10	AB1	B	985	989	Right-handed 310
Helix 11	AB2	B	1026	1030	Right-handed alpha
Helix 12	AB3	B	1046	1057	Right-handed alpha
Helix 13	AB4	B	1068	1070	Right-handed 310
Helix 14	AB5	B	1071	1082	Right-handed alpha
Helix 15	AB6	B	1099	1115	Right-handed alpha
Helix 16	AB7	B	1126	1134	Right-handed alpha
Helix 17	AB8	B	1137	1139	Right-handed 310
Helix 18	AB9	B	1148	1152	Right-handed 310
Helix 19	AC1	B	1161	1171	Right-handed alpha
Helix 20	AC2	C	941	945	Right-handed 310
Helix 21	AC3	C	985	989	Right-handed 310
Helix 22	AC4	C	1047	1057	Right-handed alpha
Helix 23	AC5	C	1071	1082	Right-handed alpha
Helix 24	AC6	C	1101	1113	Right-handed alpha
Helix 25	AC7	C	1124	1134	Right-handed alpha
Helix 26	AC8	C	1137	1139	Right-handed 310

There are 13 sheets in PDB entry 9JZP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	920	921	first strand
Strand 2	A	933	937	anti-parallel
Strand 3	A	979	983	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	924	927	first strand
Strand 2	A	1007	1015	parallel
Strand 3	A	993	1001	anti-parallel
Strand 4	A	952	957	anti-parallel
Strand 5	A	967	973	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	939	940	first strand
Strand 2	A	946	947	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1088	1092	first strand
Strand 2	A	1060	1068	parallel
Strand 3	A	1020	1025	parallel
Strand 4	A	1117	1123	parallel
Strand 5	A	1141	1143	parallel
Strand 6	A	1156	1157	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	920	921	first strand
Strand 2	B	933	937	anti-parallel
Strand 3	B	979	983	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	924	927	first strand
Strand 2	B	1007	1015	parallel
Strand 3	B	993	1001	anti-parallel
Strand 4	B	952	957	anti-parallel
Strand 5	B	967	973	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	939	940	first strand
Strand 2	B	946	947	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1088	1090	first strand
Strand 2	B	1060	1064	parallel
Strand 3	B	1020	1025	parallel
Strand 4	B	1117	1123	parallel
Strand 5	B	1141	1143	parallel
Strand 6	B	1156	1157	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1031	1032	first strand
Strand 2	B	1042	1043	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	920	921	first strand
Strand 2	C	933	937	anti-parallel
Strand 3	C	979	983	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	924	927	first strand
Strand 2	C	1007	1015	parallel
Strand 3	C	993	1001	anti-parallel
Strand 4	C	952	957	anti-parallel
Strand 5	C	967	973	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	939	940	first strand
Strand 2	C	946	947	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1088	1092	first strand
Strand 2	C	1060	1068	parallel
Strand 3	C	1020	1025	parallel
Strand 4	C	1117	1123	parallel
Strand 5	C	1141	1143	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9JZP

Analysis of interatomic Contacts of Structural Units in PDB entry:
9JZP