Analysis of interatomic Contacts of Structural Units in PDB entry:
9JZW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9JZW entry

There are 4 chains in PDB entry 9JZW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 5	GLU 345
B	ASN 20	GLU 345
C	THR 5	GLU 345
D	ASN 20	GLU 345

There are 64 helices in PDB entry 9JZW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	8	12	Right-handed 310
Helix 2	AA2	A	15	26	Right-handed alpha
Helix 3	AA3	A	26	32	Right-handed alpha
Helix 4	AA4	A	68	77	Right-handed alpha
Helix 5	AA5	A	82	96	Right-handed alpha
Helix 6	AA6	A	97	99	Right-handed 310
Helix 7	AA7	A	115	134	Right-handed alpha
Helix 8	AA8	A	167	169	Right-handed 310
Helix 9	AA9	A	193	204	Right-handed alpha
Helix 10	AB1	A	218	223	Right-handed alpha
Helix 11	AB2	A	229	240	Right-handed alpha
Helix 12	AB3	A	251	257	Right-handed alpha
Helix 13	AB4	A	271	274	Right-handed 310
Helix 14	AB5	A	277	288	Right-handed alpha
Helix 15	AB6	A	290	298	Right-handed alpha
Helix 16	AB7	A	309	311	Right-handed 310
Helix 17	AB8	A	312	323	Right-handed alpha
Helix 18	AB9	B	22	33	Right-handed alpha
Helix 19	AC1	B	69	78	Right-handed alpha
Helix 20	AC2	B	82	97	Right-handed alpha
Helix 21	AC3	B	115	134	Right-handed alpha
Helix 22	AC4	B	167	169	Right-handed 310
Helix 23	AC5	B	193	205	Right-handed alpha
Helix 24	AC6	B	218	224	Right-handed alpha
Helix 25	AC7	B	229	240	Right-handed alpha
Helix 26	AC8	B	251	257	Right-handed alpha
Helix 27	AC9	B	258	261	Right-handed 310
Helix 28	AD1	B	271	274	Right-handed 310
Helix 29	AD2	B	277	288	Right-handed alpha
Helix 30	AD3	B	290	298	Right-handed alpha
Helix 31	AD4	B	309	311	Right-handed 310
Helix 32	AD5	B	312	323	Right-handed alpha
Helix 33	AD6	C	8	12	Right-handed 310
Helix 34	AD7	C	15	32	Right-handed alpha
Helix 35	AD8	C	68	77	Right-handed alpha
Helix 36	AD9	C	82	96	Right-handed alpha
Helix 37	AE1	C	97	99	Right-handed 310
Helix 38	AE2	C	115	134	Right-handed alpha
Helix 39	AE3	C	167	169	Right-handed 310
Helix 40	AE4	C	193	205	Right-handed alpha
Helix 41	AE5	C	218	223	Right-handed alpha
Helix 42	AE6	C	229	240	Right-handed alpha
Helix 43	AE7	C	251	257	Right-handed alpha
Helix 44	AE8	C	258	261	Right-handed 310
Helix 45	AE9	C	272	274	Right-handed 310
Helix 46	AF1	C	277	288	Right-handed alpha
Helix 47	AF2	C	290	298	Right-handed alpha
Helix 48	AF3	C	309	311	Right-handed 310
Helix 49	AF4	C	312	322	Right-handed alpha
Helix 50	AF5	D	22	33	Right-handed alpha
Helix 51	AF6	D	69	77	Right-handed alpha
Helix 52	AF7	D	82	97	Right-handed alpha
Helix 53	AF8	D	115	134	Right-handed alpha
Helix 54	AF9	D	167	169	Right-handed 310
Helix 55	AG1	D	193	205	Right-handed alpha
Helix 56	AG2	D	218	223	Right-handed alpha
Helix 57	AG3	D	229	240	Right-handed alpha
Helix 58	AG4	D	251	257	Right-handed alpha
Helix 59	AG5	D	258	261	Right-handed 310
Helix 60	AG6	D	272	274	Right-handed 310
Helix 61	AG7	D	277	288	Right-handed alpha
Helix 62	AG8	D	290	298	Right-handed alpha
Helix 63	AG9	D	309	311	Right-handed 310
Helix 64	AH1	D	312	323	Right-handed alpha

There are 12 sheets in PDB entry 9JZW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	39	first strand
Strand 2	A	47	50	anti-parallel
Strand 3	B	58	66	anti-parallel
Strand 4	B	154	165	anti-parallel
Strand 5	B	101	111	anti-parallel
Strand 6	B	136	144	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	136	144	first strand
Strand 2	A	101	111	parallel
Strand 3	A	154	165	anti-parallel
Strand 4	A	58	66	anti-parallel
Strand 5	B	47	50	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	244	247	first strand
Strand 2	A	302	308	anti-parallel
Strand 3	A	180	185	anti-parallel
Strand 4	A	327	334	anti-parallel
Strand 5	A	266	269	anti-parallel
Strand 6	A	342	344	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	212	213	first strand
Strand 2	A	216	217	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	244	247	first strand
Strand 2	B	302	308	anti-parallel
Strand 3	B	180	185	anti-parallel
Strand 4	B	327	335	anti-parallel
Strand 5	B	265	269	anti-parallel
Strand 6	B	342	344	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	212	213	first strand
Strand 2	B	216	217	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	38	39	first strand
Strand 2	C	48	50	anti-parallel
Strand 3	D	58	66	anti-parallel
Strand 4	D	154	165	anti-parallel
Strand 5	D	101	111	anti-parallel
Strand 6	D	136	144	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	136	144	first strand
Strand 2	C	101	111	parallel
Strand 3	C	154	165	anti-parallel
Strand 4	C	58	66	anti-parallel
Strand 5	D	47	50	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	244	247	first strand
Strand 2	C	302	308	anti-parallel
Strand 3	C	180	185	anti-parallel
Strand 4	C	327	335	anti-parallel
Strand 5	C	265	270	anti-parallel
Strand 6	C	342	345	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	212	213	first strand
Strand 2	C	216	217	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	244	247	first strand
Strand 2	D	302	308	anti-parallel
Strand 3	D	180	185	anti-parallel
Strand 4	D	327	335	anti-parallel
Strand 5	D	265	270	anti-parallel
Strand 6	D	342	345	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	212	213	first strand
Strand 2	D	216	217	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9JZW

Analysis of interatomic Contacts of Structural Units in PDB entry:
9JZW