Analysis of interatomic Contacts of Structural Units in PDB entry:
9K06


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9K06 entry

There are 2 chains in PDB entry 9K06 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 14LEU 338
B
 THR 14LEU 338
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 9K06. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 28Right-handed alpha
Helix 2
AA2
A
29 33Right-handed 310
Helix 3
AA3
A
69 78Right-handed alpha
Helix 4
AA4
A
82 97Right-handed alpha
Helix 5
AA5
A
115 134Right-handed alpha
Helix 6
AA6
A
165 167Right-handed 310
Helix 7
AA7
A
191 204Right-handed alpha
Helix 8
AA8
A
214 220Right-handed alpha
Helix 9
AA9
A
225 234Right-handed alpha
Helix 10
AB1
A
247 255Right-handed 310
Helix 11
AB2
A
268 276Right-handed alpha
Helix 12
AB3
A
280 286Right-handed alpha
Helix 13
AB4
A
299 301Right-handed 310
Helix 14
AB5
A
302 312Right-handed alpha
Helix 15
AB6
A
333 335Right-handed 310
Helix 16
AB7
B
15 28Right-handed alpha
Helix 17
AB8
B
29 33Right-handed 310
Helix 18
AB9
B
69 78Right-handed alpha
Helix 19
AC1
B
82 97Right-handed alpha
Helix 20
AC2
B
115 134Right-handed alpha
Helix 21
AC3
B
191 204Right-handed alpha
Helix 22
AC4
B
214 220Right-handed alpha
Helix 23
AC5
B
225 236Right-handed alpha
Helix 24
AC6
B
247 255Right-handed 310
Helix 25
AC7
B
268 277Right-handed alpha
Helix 26
AC8
B
280 285Right-handed alpha
Helix 27
AC9
B
299 301Right-handed 310
Helix 28
AD1
B
302 312Right-handed alpha
Helix 29
AD2
B
333 335Right-handed 310
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There are 6 sheets in PDB entry 9K06. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 39first strand
Strand 2
A
47 50anti-parallel
Strand 3
B
58 66anti-parallel
Strand 4
B
152 163anti-parallel
Strand 5
B
101 111anti-parallel
Strand 6
B
136 144parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
136 144first strand
Strand 2
A
101 111parallel
Strand 3
A
152 163anti-parallel
Strand 4
A
58 66anti-parallel
Strand 5
B
47 50anti-parallel
Strand 6
B
38 39anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
240 243first strand
Strand 2
A
292 298anti-parallel
Strand 3
A
178 183anti-parallel
Strand 4
A
316 323anti-parallel
Strand 5
A
259 262anti-parallel
Strand 6
A
329 331parallel
Strand 7
A
336 338anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
208 209first strand
Strand 2
A
212 213anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
240 243first strand
Strand 2
B
292 298anti-parallel
Strand 3
B
178 183anti-parallel
Strand 4
B
316 326anti-parallel
Strand 5
B
258 262anti-parallel
Strand 6
B
329 331parallel
Strand 7
B
336 338anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
208 209first strand
Strand 2
B
212 213anti-parallel
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