Analysis of interatomic Contacts of Structural Units in PDB entry:
9K0B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9K0B entry

There are 2 chains in PDB entry 9K0B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2LEU 317
B
 SER 2LEU 317
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 9K0B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 15Right-handed alpha
Helix 2
AA2
A
19 27Right-handed alpha
Helix 3
AA3
A
40 66Right-handed alpha
Helix 4
AA4
A
71 93Right-handed alpha
Helix 5
AA5
A
95 106Right-handed alpha
Helix 6
AA6
A
111 137Right-handed alpha
Helix 7
AA7
A
138 143Right-handed 310
Helix 8
AA8
A
202 212Right-handed alpha
Helix 9
AA9
A
248 250Right-handed 310
Helix 10
AB1
A
286 290Right-handed 310
Helix 11
AB2
A
291 305Right-handed alpha
Helix 12
AB3
B
4 15Right-handed alpha
Helix 13
AB4
B
19 27Right-handed alpha
Helix 14
AB5
B
40 67Right-handed alpha
Helix 15
AB6
B
71 83Right-handed alpha
Helix 16
AB7
B
83 93Right-handed alpha
Helix 17
AB8
B
95 106Right-handed alpha
Helix 18
AB9
B
111 137Right-handed alpha
Helix 19
AC1
B
138 143Right-handed 310
Helix 20
AC2
B
202 212Right-handed alpha
Helix 21
AC3
B
248 250Right-handed 310
Helix 22
AC4
B
286 290Right-handed 310
Helix 23
AC5
B
291 305Right-handed alpha
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There are 4 sheets in PDB entry 9K0B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
215 218first strand
Strand 2
A
311 316anti-parallel
Strand 3
A
179 187anti-parallel
Strand 4
A
191 198anti-parallel
Strand 5
A
277 284anti-parallel
Strand 6
A
254 258anti-parallel
Strand 7
A
264 272anti-parallel
Strand 8
A
226 232anti-parallel
Strand 9
A
220 221anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
215 218first strand
Strand 2
A
311 316anti-parallel
Strand 3
A
179 187anti-parallel
Strand 4
A
191 198anti-parallel
Strand 5
A
277 284anti-parallel
Strand 6
A
244 246anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
215 218first strand
Strand 2
B
311 316anti-parallel
Strand 3
B
179 187anti-parallel
Strand 4
B
191 198anti-parallel
Strand 5
B
277 284anti-parallel
Strand 6
B
254 258anti-parallel
Strand 7
B
264 272anti-parallel
Strand 8
B
226 232anti-parallel
Strand 9
B
220 221anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
215 218first strand
Strand 2
B
311 316anti-parallel
Strand 3
B
179 187anti-parallel
Strand 4
B
191 198anti-parallel
Strand 5
B
277 284anti-parallel
Strand 6
B
244 246anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il