Analysis of interatomic Contacts of Structural Units in PDB entry:
9K0H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9K0H entry

There are 2 chains in PDB entry 9K0H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 12ASN 268
B
 SER 12ASN 268
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 9K0H. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
52 56Right-handed 310
Helix 2
AA2
A
70 73Right-handed 310
Helix 3
AA3
A
74 84Right-handed alpha
Helix 4
AA4
A
99 114Right-handed alpha
Helix 5
AA5
A
136 145Right-handed alpha
Helix 6
AA6
A
166 172Right-handed 310
Helix 7
AA7
A
189 194Right-handed alpha
Helix 8
AA8
A
194 201Right-handed alpha
Helix 9
AA9
A
222 224Right-handed 310
Helix 10
AB1
A
225 239Right-handed alpha
Helix 11
AB2
A
240 247Right-handed 310
Helix 12
AB3
A
252 257Right-handed alpha
Helix 13
AB4
B
52 56Right-handed 310
Helix 14
AB5
B
70 73Right-handed 310
Helix 15
AB6
B
74 84Right-handed alpha
Helix 16
AB7
B
99 115Right-handed alpha
Helix 17
AB8
B
136 145Right-handed alpha
Helix 18
AB9
B
166 172Right-handed 310
Helix 19
AC1
B
189 194Right-handed alpha
Helix 20
AC2
B
194 201Right-handed alpha
Helix 21
AC3
B
222 224Right-handed 310
Helix 22
AC4
B
225 239Right-handed alpha
Helix 23
AC5
B
240 247Right-handed 310
Helix 24
AC6
B
252 257Right-handed alpha
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There are 4 sheets in PDB entry 9K0H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 38first strand
Strand 2
A
43 48anti-parallel
Strand 3
A
87 91anti-parallel
Strand 4
A
58 64parallel
Strand 5
A
124 135parallel
Strand 6
A
152 158parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
177 182first strand
Strand 2
A
205 210parallel
Strand 3
A
260 265anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 38first strand
Strand 2
B
43 48anti-parallel
Strand 3
B
87 91anti-parallel
Strand 4
B
58 64parallel
Strand 5
B
124 135parallel
Strand 6
B
152 158parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
177 182first strand
Strand 2
B
205 210parallel
Strand 3
B
260 265anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il