Analysis of interatomic Contacts of Structural Units in PDB entry:
9K14

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9K14 entry

There are 13 chains in PDB entry 9K14 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
T	C 4	C 24
N	G 10	G 31
P	A 12	U 18
A	GLY 321	ASN 1232
C	GLY 3	ASP 299
F	PRO 58	TRP 137
J	MET 1	ASN 63
K	ARG 6	SER 113
L	PRO 7	ARG 51
H	ILE 5	LYS 145
I	THR 3	GLU 114
E	LEU 22	TRP 230
B	VAL 15	ARG 1048

There are 88 helices in PDB entry 9K14. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	342	347	Right-handed alpha
Helix 2	AA2	A	359	369	Right-handed alpha
Helix 3	AA3	A	440	444	Right-handed 310
Helix 4	AA4	A	462	473	Right-handed alpha
Helix 5	AA5	A	476	480	Right-handed 310
Helix 6	AA6	A	492	505	Right-handed alpha
Helix 7	AA7	A	509	517	Right-handed alpha
Helix 8	AA8	A	541	546	Right-handed alpha
Helix 9	AA9	A	547	549	Right-handed 310
Helix 10	AB1	A	576	589	Right-handed alpha
Helix 11	AB2	A	595	613	Right-handed alpha
Helix 12	AB3	A	627	649	Right-handed alpha
Helix 13	AB4	A	659	675	Right-handed alpha
Helix 14	AB5	A	677	682	Right-handed alpha
Helix 15	AB6	A	692	700	Right-handed alpha
Helix 16	AB7	A	715	729	Right-handed alpha
Helix 17	AB8	A	744	748	Right-handed 310
Helix 18	AB9	A	750	771	Right-handed alpha
Helix 19	AC1	A	773	787	Right-handed alpha
Helix 20	AC2	A	827	847	Right-handed alpha
Helix 21	AC3	A	848	863	Right-handed alpha
Helix 22	AC4	A	871	876	Right-handed alpha
Helix 23	AC5	A	884	888	Right-handed 310
Helix 24	AC6	A	891	904	Right-handed alpha
Helix 25	AC7	A	909	911	Right-handed 310
Helix 26	AC8	A	943	949	Right-handed alpha
Helix 27	AC9	A	952	970	Right-handed alpha
Helix 28	AD1	A	1016	1027	Right-handed alpha
Helix 29	AD2	A	1027	1034	Right-handed alpha
Helix 30	AD3	A	1085	1095	Right-handed alpha
Helix 31	AD4	A	1111	1120	Right-handed alpha
Helix 32	AD5	A	1120	1138	Right-handed alpha
Helix 33	AD6	A	1144	1156	Right-handed alpha
Helix 34	AD7	A	1165	1176	Right-handed alpha
Helix 35	AD8	C	30	44	Right-handed alpha
Helix 36	AD9	C	63	73	Right-handed alpha
Helix 37	AE1	C	121	125	Right-handed 310
Helix 38	AE2	C	176	180	Right-handed 310
Helix 39	AE3	C	204	214	Right-handed alpha
Helix 40	AE4	C	241	250	Right-handed alpha
Helix 41	AE5	C	276	294	Right-handed alpha
Helix 42	AE6	F	66	83	Right-handed alpha
Helix 43	AE7	F	96	108	Right-handed alpha
Helix 44	AE8	F	129	131	Right-handed 310
Helix 45	AE9	J	17	27	Right-handed alpha
Helix 46	AF1	J	30	37	Right-handed alpha
Helix 47	AF2	J	42	51	Right-handed alpha
Helix 48	AF3	J	55	62	Right-handed alpha
Helix 49	AF4	K	39	53	Right-handed alpha
Helix 50	AF5	K	82	113	Right-handed alpha
Helix 51	AF6	E	31	51	Right-handed alpha
Helix 52	AF7	E	62	71	Right-handed alpha
Helix 53	AF8	E	104	116	Right-handed alpha
Helix 54	AF9	E	135	142	Right-handed alpha
Helix 55	AG1	E	158	162	Right-handed 310
Helix 56	AG2	E	172	184	Right-handed alpha
Helix 57	AG3	E	197	204	Right-handed alpha
Helix 58	AG4	B	17	20	Right-handed 310
Helix 59	AG5	B	21	41	Right-handed alpha
Helix 60	AG6	B	43	56	Right-handed alpha
Helix 61	AG7	B	56	65	Right-handed alpha
Helix 62	AG8	B	111	119	Right-handed alpha
Helix 63	AG9	B	275	283	Right-handed alpha
Helix 64	AH1	B	287	295	Right-handed alpha
Helix 65	AH2	B	300	316	Right-handed alpha
Helix 66	AH3	B	325	336	Right-handed alpha
Helix 67	AH4	B	345	354	Right-handed alpha
Helix 68	AH5	B	360	380	Right-handed alpha
Helix 69	AH6	B	390	392	Right-handed 310
Helix 70	AH7	B	398	428	Right-handed alpha
Helix 71	AH8	B	441	455	Right-handed alpha
Helix 72	AH9	B	478	485	Right-handed alpha
Helix 73	AI1	B	506	510	Right-handed 310
Helix 74	AI2	B	544	551	Right-handed 310
Helix 75	AI3	B	582	595	Right-handed alpha
Helix 76	AI4	B	631	633	Right-handed 310
Helix 77	AI5	B	645	652	Right-handed alpha
Helix 78	AI6	B	660	664	Right-handed alpha
Helix 79	AI7	B	672	678	Right-handed alpha
Helix 80	AI8	B	688	693	Right-handed 310
Helix 81	AI9	B	707	717	Right-handed alpha
Helix 82	AJ1	B	729	733	Right-handed 310
Helix 83	AJ2	B	751	758	Right-handed alpha
Helix 84	AJ3	B	788	793	Right-handed alpha
Helix 85	AJ4	B	925	929	Right-handed 310
Helix 86	AJ5	B	944	947	Right-handed 310
Helix 87	AJ6	B	952	966	Right-handed alpha
Helix 88	AJ7	B	993	1005	Right-handed alpha

There are 36 sheets in PDB entry 9K14. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1046	1048	first strand
Strand 2	A	323	330	anti-parallel
Strand 3	A	454	458	anti-parallel
Strand 4	A	409	413	anti-parallel
Strand 5	A	424	430	anti-parallel
Strand 6	A	338	341	parallel
Strand 7	A	436	438	anti-parallel
Strand 8	A	323	330	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	350	354	first strand
Strand 2	A	399	403	anti-parallel
Strand 3	A	372	377	anti-parallel
Strand 4	A	380	383	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	507	508	first strand
Strand 2	A	539	540	anti-parallel

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There are 11 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	529	532	first strand
Strand 2	H	138	140	first strand
Strand 3	H	112	116	first strand
Strand 4	H	119	123	anti-parallel
Strand 5	H	40	46	anti-parallel
Strand 6	H	27	34	anti-parallel
Strand 7	H	9	17	anti-parallel
Strand 8	H	59	61	anti-parallel
Strand 9	H	143	144	anti-parallel
Strand 10	H	91	99	anti-parallel
Strand 11	H	138	140	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	555	556	first strand
Strand 2	A	560	562	anti-parallel
Strand 3	A	567	570	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	703	704	first strand
Strand 2	A	740	741	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	789	791	first strand
Strand 2	A	797	799	anti-parallel
Strand 3	A	805	807	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1043	1049	first strand
Strand 2	A	1071	1076	anti-parallel
Strand 3	A	877	879	anti-parallel
Strand 4	A	1108	1109	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	906	907	first strand
Strand 2	A	1036	1038	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	983	986	first strand
Strand 2	A	1004	1008	anti-parallel
Strand 3	A	935	940	anti-parallel
Strand 4	A	914	919	anti-parallel
Strand 5	I	44	47	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1227	1230	first strand
Strand 2	F	113	117	anti-parallel
Strand 3	F	123	127	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	17	first strand
Strand 2	C	21	27	anti-parallel
Strand 3	C	256	266	anti-parallel
Strand 4	C	189	195	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	17	first strand
Strand 2	C	21	27	anti-parallel
Strand 3	C	269	270	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	126	127	first strand
Strand 2	C	104	111	anti-parallel
Strand 3	C	161	171	anti-parallel
Strand 4	C	47	58	anti-parallel
Strand 5	L	46	49	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	118	120	first strand
Strand 2	C	154	156	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	220	223	first strand
Strand 2	C	228	231	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	19	22	first strand
Strand 2	K	30	36	anti-parallel
Strand 3	K	70	77	anti-parallel
Strand 4	K	56	62	anti-parallel

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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	18	19	first strand
Strand 2	L	10	12	anti-parallel
Strand 3	L	36	39	anti-parallel
Strand 4	B	877	885	anti-parallel
Strand 5	B	891	902	anti-parallel
Strand 6	B	798	809	anti-parallel
Strand 7	B	738	741	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	18	19	first strand
Strand 2	L	10	12	anti-parallel
Strand 3	L	36	39	anti-parallel
Strand 4	B	877	885	anti-parallel
Strand 5	B	849	850	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	14	16	first strand
Strand 2	I	27	29	anti-parallel
Strand 3	I	35	36	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	84	89	first strand
Strand 2	I	98	103	anti-parallel
Strand 3	I	111	113	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	94	96	first strand
Strand 2	E	124	128	parallel
Strand 3	E	148	151	parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	169	170	first strand
Strand 2	E	210	215	anti-parallel
Strand 3	E	223	229	anti-parallel
Strand 4	E	192	193	parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	68	70	first strand
Strand 2	B	87	96	anti-parallel
Strand 3	B	123	133	anti-parallel
Strand 4	B	163	171	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	101	first strand
Strand 2	B	108	109	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	204	206	first strand
Strand 2	B	209	213	anti-parallel
Strand 3	B	471	473	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	394	397	first strand
Strand 2	B	215	219	anti-parallel
Strand 3	B	488	490	parallel
Strand 4	B	527	529	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	224	226	first strand
Strand 2	B	232	235	anti-parallel
Strand 3	B	244	249	anti-parallel
Strand 4	B	263	268	anti-parallel
Strand 5	B	271	274	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	457	458	first strand
Strand 2	B	466	467	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	535	536	first strand
Strand 2	B	623	629	anti-parallel
Strand 3	B	655	659	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	535	536	first strand
Strand 2	B	623	629	anti-parallel
Strand 3	B	684	685	anti-parallel
Strand 4	B	668	669	parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	553	554	first strand
Strand 2	B	575	580	anti-parallel
Strand 3	B	568	572	anti-parallel
Strand 4	B	613	617	parallel
Strand 5	B	604	608	anti-parallel

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There are 8 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1011	1012	first strand
Strand 2	B	1027	1036	anti-parallel
Strand 3	B	909	911	anti-parallel
Strand 4	B	918	924	anti-parallel
Strand 5	B	783	787	parallel
Strand 6	B	940	942	anti-parallel
Strand 7	B	766	772	parallel
Strand 8	B	1027	1036	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	823	825	first strand
Strand 2	B	859	861	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	855	857	first strand
Strand 2	B	869	870	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	931	932	first strand
Strand 2	B	1014	1015	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9K14

Analysis of interatomic Contacts of Structural Units in PDB entry:
9K14