Analysis of interatomic Contacts of Structural Units in PDB entry:
9K15

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9K15 entry

There are 13 chains in PDB entry 9K15 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 321	ASN 1232
C	GLY 3	ASP 299
F	PRO 58	ILE 132
J	MET 1	ASN 63
K	ARG 6	SER 113
L	PRO 7	ARG 51
H	ILE 5	LYS 145
I	THR 3	GLU 114
E	LEU 22	TRP 230
B	VAL 15	ARG 1048
T	C 4	G 23
N	G 10	G 31
P	C 14	U 17

There are 94 helices in PDB entry 9K15. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	343	347	Right-handed alpha
Helix 2	AA2	A	359	369	Right-handed alpha
Helix 3	AA3	A	439	441	Right-handed 310
Helix 4	AA4	A	442	447	Right-handed alpha
Helix 5	AA5	A	462	473	Right-handed alpha
Helix 6	AA6	A	475	479	Right-handed 310
Helix 7	AA7	A	492	505	Right-handed alpha
Helix 8	AA8	A	509	517	Right-handed alpha
Helix 9	AA9	A	541	546	Right-handed alpha
Helix 10	AB1	A	547	549	Right-handed 310
Helix 11	AB2	A	576	591	Right-handed alpha
Helix 12	AB3	A	595	613	Right-handed alpha
Helix 13	AB4	A	620	624	Right-handed 310
Helix 14	AB5	A	627	647	Right-handed alpha
Helix 15	AB6	A	648	652	Right-handed 310
Helix 16	AB7	A	657	675	Right-handed alpha
Helix 17	AB8	A	679	684	Right-handed alpha
Helix 18	AB9	A	689	700	Right-handed alpha
Helix 19	AC1	A	715	729	Right-handed alpha
Helix 20	AC2	A	750	771	Right-handed alpha
Helix 21	AC3	A	776	784	Right-handed alpha
Helix 22	AC4	A	827	847	Right-handed alpha
Helix 23	AC5	A	848	861	Right-handed alpha
Helix 24	AC6	A	872	874	Right-handed 310
Helix 25	AC7	A	884	888	Right-handed 310
Helix 26	AC8	A	891	904	Right-handed alpha
Helix 27	AC9	A	908	911	Right-handed alpha
Helix 28	AD1	A	942	949	Right-handed alpha
Helix 29	AD2	A	953	970	Right-handed alpha
Helix 30	AD3	A	975	979	Right-handed 310
Helix 31	AD4	A	1016	1027	Right-handed alpha
Helix 32	AD5	A	1027	1034	Right-handed alpha
Helix 33	AD6	A	1085	1095	Right-handed alpha
Helix 34	AD7	A	1096	1102	Right-handed 310
Helix 35	AD8	A	1111	1120	Right-handed alpha
Helix 36	AD9	A	1120	1138	Right-handed alpha
Helix 37	AE1	A	1144	1156	Right-handed alpha
Helix 38	AE2	C	30	44	Right-handed alpha
Helix 39	AE3	C	63	73	Right-handed alpha
Helix 40	AE4	C	123	125	Right-handed 310
Helix 41	AE5	C	176	180	Right-handed 310
Helix 42	AE6	C	204	214	Right-handed alpha
Helix 43	AE7	C	241	250	Right-handed alpha
Helix 44	AE8	C	276	294	Right-handed alpha
Helix 45	AE9	F	66	83	Right-handed alpha
Helix 46	AF1	F	96	108	Right-handed alpha
Helix 47	AF2	F	129	131	Right-handed 310
Helix 48	AF3	J	17	27	Right-handed alpha
Helix 49	AF4	J	30	39	Right-handed alpha
Helix 50	AF5	J	42	51	Right-handed alpha
Helix 51	AF6	J	55	62	Right-handed alpha
Helix 52	AF7	K	39	51	Right-handed alpha
Helix 53	AF8	K	82	113	Right-handed alpha
Helix 54	AF9	E	30	51	Right-handed alpha
Helix 55	AG1	E	63	71	Right-handed alpha
Helix 56	AG2	E	104	116	Right-handed alpha
Helix 57	AG3	E	133	135	Right-handed 310
Helix 58	AG4	E	136	141	Right-handed alpha
Helix 59	AG5	E	153	156	Right-handed 310
Helix 60	AG6	E	158	162	Right-handed 310
Helix 61	AG7	E	172	183	Right-handed alpha
Helix 62	AG8	E	197	203	Right-handed alpha
Helix 63	AG9	B	17	20	Right-handed 310
Helix 64	AH1	B	21	40	Right-handed alpha
Helix 65	AH2	B	43	65	Right-handed alpha
Helix 66	AH3	B	111	119	Right-handed alpha
Helix 67	AH4	B	275	283	Right-handed alpha
Helix 68	AH5	B	286	295	Right-handed alpha
Helix 69	AH6	B	300	318	Right-handed alpha
Helix 70	AH7	B	326	337	Right-handed alpha
Helix 71	AH8	B	345	354	Right-handed alpha
Helix 72	AH9	B	360	380	Right-handed alpha
Helix 73	AI1	B	390	392	Right-handed 310
Helix 74	AI2	B	398	428	Right-handed alpha
Helix 75	AI3	B	434	439	Right-handed alpha
Helix 76	AI4	B	441	455	Right-handed alpha
Helix 77	AI5	B	478	485	Right-handed alpha
Helix 78	AI6	B	545	552	Right-handed 310
Helix 79	AI7	B	582	595	Right-handed alpha
Helix 80	AI8	B	632	637	Right-handed 310
Helix 81	AI9	B	645	652	Right-handed alpha
Helix 82	AJ1	B	661	666	Right-handed 310
Helix 83	AJ2	B	672	679	Right-handed alpha
Helix 84	AJ3	B	688	693	Right-handed 310
Helix 85	AJ4	B	702	706	Right-handed 310
Helix 86	AJ5	B	707	717	Right-handed alpha
Helix 87	AJ6	B	751	758	Right-handed alpha
Helix 88	AJ7	B	788	793	Right-handed alpha
Helix 89	AJ8	B	925	929	Right-handed 310
Helix 90	AJ9	B	943	945	Right-handed 310
Helix 91	AK1	B	946	951	Right-handed alpha
Helix 92	AK2	B	953	966	Right-handed alpha
Helix 93	AK3	B	993	1005	Right-handed alpha
Helix 94	AK4	B	1040	1044	Right-handed 310

There are 32 sheets in PDB entry 9K15. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	323	330	first strand
Strand 2	A	436	438	parallel
Strand 3	A	338	342	anti-parallel
Strand 4	A	424	431	parallel
Strand 5	A	409	413	anti-parallel
Strand 6	A	454	458	anti-parallel
Strand 7	A	323	330	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	350	354	first strand
Strand 2	A	399	403	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	507	508	first strand
Strand 2	A	539	540	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	560	562	first strand
Strand 2	A	567	570	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	703	704	first strand
Strand 2	A	740	741	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	789	791	first strand
Strand 2	A	797	799	anti-parallel
Strand 3	A	805	807	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1043	1049	first strand
Strand 2	A	1071	1076	anti-parallel
Strand 3	A	876	879	anti-parallel
Strand 4	A	1108	1109	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	906	907	first strand
Strand 2	A	1036	1038	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1004	1007	first strand
Strand 2	A	936	941	anti-parallel
Strand 3	A	912	918	anti-parallel
Strand 4	I	42	47	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	18	first strand
Strand 2	C	21	27	anti-parallel
Strand 3	C	256	271	anti-parallel
Strand 4	C	182	195	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	126	127	first strand
Strand 2	C	104	111	anti-parallel
Strand 3	C	161	171	anti-parallel
Strand 4	C	47	58	anti-parallel
Strand 5	L	46	49	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	118	121	first strand
Strand 2	C	152	156	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	220	223	first strand
Strand 2	C	228	231	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	113	115	first strand
Strand 2	F	125	127	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	19	23	first strand
Strand 2	K	30	36	anti-parallel
Strand 3	K	70	77	anti-parallel
Strand 4	K	56	62	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	18	19	first strand
Strand 2	L	10	12	anti-parallel
Strand 3	L	36	39	anti-parallel
Strand 4	B	877	886	anti-parallel
Strand 5	B	891	902	anti-parallel
Strand 6	B	798	809	anti-parallel
Strand 7	B	737	741	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	18	19	first strand
Strand 2	L	10	12	anti-parallel
Strand 3	L	36	39	anti-parallel
Strand 4	B	877	886	anti-parallel
Strand 5	B	849	850	anti-parallel

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There are 9 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	138	140	first strand
Strand 2	H	94	99	anti-parallel
Strand 3	H	112	115	anti-parallel
Strand 4	H	120	123	anti-parallel
Strand 5	H	40	46	anti-parallel
Strand 6	H	27	34	anti-parallel
Strand 7	H	9	17	anti-parallel
Strand 8	H	59	61	anti-parallel
Strand 9	H	143	144	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	14	16	first strand
Strand 2	I	26	29	anti-parallel
Strand 3	I	35	37	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	86	89	first strand
Strand 2	I	98	102	anti-parallel
Strand 3	I	111	113	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	95	97	first strand
Strand 2	E	125	128	parallel
Strand 3	E	148	151	parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	192	193	first strand
Strand 2	E	223	229	parallel
Strand 3	E	210	215	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	68	69	first strand
Strand 2	B	88	96	anti-parallel
Strand 3	B	123	132	anti-parallel
Strand 4	B	163	171	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	101	first strand
Strand 2	B	108	109	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	204	206	first strand
Strand 2	B	209	213	anti-parallel
Strand 3	B	471	473	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	394	397	first strand
Strand 2	B	215	219	anti-parallel
Strand 3	B	488	490	parallel
Strand 4	B	527	529	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	225	226	first strand
Strand 2	B	232	235	anti-parallel
Strand 3	B	244	249	anti-parallel
Strand 4	B	263	268	anti-parallel
Strand 5	B	272	274	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	535	536	first strand
Strand 2	B	623	628	anti-parallel
Strand 3	B	655	658	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	554	555	first strand
Strand 2	B	575	580	anti-parallel
Strand 3	B	568	572	anti-parallel
Strand 4	B	613	617	parallel
Strand 5	B	604	608	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	668	669	first strand
Strand 2	B	684	685	parallel

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There are 8 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1011	1012	first strand
Strand 2	B	1027	1036	anti-parallel
Strand 3	B	909	912	anti-parallel
Strand 4	B	917	924	anti-parallel
Strand 5	B	783	787	parallel
Strand 6	B	940	942	anti-parallel
Strand 7	B	766	772	parallel
Strand 8	B	1027	1036	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	855	857	first strand
Strand 2	B	869	870	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9K15

Analysis of interatomic Contacts of Structural Units in PDB entry:
9K15