Analysis of interatomic Contacts of Structural Units in PDB entry:
9K1V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9K1V entry

There are 3 chains in PDB entry 9K1V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
H
 GLU 1SER 118
L
 GLU 1MET 107
A
 LYS 47GLU 584
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 9K1V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
H
28 32Right-handed 310
Helix 2
AA2
H
62 65Right-handed 310
Helix 3
AA3
H
87 91Right-handed 310
Helix 4
AA4
L
30 32Right-handed 310
Helix 5
AA5
L
80 84Right-handed 310
Helix 6
AA6
A
48 56Right-handed alpha
Helix 7
AA7
A
60 65Right-handed alpha
Helix 8
AA8
A
65 74Right-handed alpha
Helix 9
AA9
A
76 106Right-handed alpha
Helix 10
AB1
A
111 117Right-handed alpha
Helix 11
AB2
A
118 120Right-handed 310
Helix 12
AB3
A
121 138Right-handed alpha
Helix 13
AB4
A
138 153Right-handed alpha
Helix 14
AB5
A
173 178Right-handed alpha
Helix 15
AB6
A
193 202Right-handed alpha
Helix 16
AB7
A
217 238Right-handed alpha
Helix 17
AB8
A
244 266Right-handed alpha
Helix 18
AB9
A
269 279Right-handed alpha
Helix 19
AC1
A
287 302Right-handed alpha
Helix 20
AC2
A
307 316Right-handed alpha
Helix 21
AC3
A
321 356Right-handed alpha
Helix 22
AC4
A
358 362Right-handed 310
Helix 23
AC5
A
368 380Right-handed alpha
Helix 24
AC6
A
383 418Right-handed alpha
Helix 25
AC7
A
426 444Right-handed alpha
Helix 26
AC8
A
445 447Right-handed 310
Helix 27
AC9
A
450 462Right-handed alpha
Helix 28
AD1
A
465 482Right-handed alpha
Helix 29
AD2
A
484 497Right-handed alpha
Helix 30
AD3
A
501 510Right-handed alpha
Helix 31
AD4
A
510 526Right-handed alpha
Helix 32
AD5
A
539 555Right-handed alpha
Helix 33
AD6
A
555 567Right-handed alpha
Helix 34
AD7
A
571 581Right-handed alpha
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There are 6 sheets in PDB entry 9K1V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 7first strand
Strand 2
H
18 25anti-parallel
Strand 3
H
78 83anti-parallel
Strand 4
H
68 73anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
58 60first strand
Strand 2
H
45 51anti-parallel
Strand 3
H
34 39anti-parallel
Strand 4
H
92 98anti-parallel
Strand 5
H
113 115anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
4 6first strand
Strand 2
L
19 29anti-parallel
Strand 3
L
63 76anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 12first strand
Strand 2
L
103 106parallel
Strand 3
L
86 91anti-parallel
Strand 4
L
34 39anti-parallel
Strand 5
L
45 50anti-parallel
Strand 6
L
54 55anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 12first strand
Strand 2
L
103 106parallel
Strand 3
L
86 91anti-parallel
Strand 4
L
98 99anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
531 532first strand
Strand 2
A
536 537anti-parallel
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