Analysis of interatomic Contacts of Structural Units in PDB entry:
9K29


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9K29 entry

There are 10 chains in PDB entry 9K29 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TRP 38SER 245
B
 GLN 22SER 245
C
 GLN 22SER 245
D
 GLN 22SER 245
E
 GLN 22SER 245
F
 MET 1ASN 262
G
 MET 1GLY 89
H
 MET 1GLY 89
I
 MET 1GLY 89
J
 MET 1GLY 89
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 79 helices in PDB entry 9K29. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
39 52Right-handed alpha
Helix 2
AA2
A
54 62Right-handed alpha
Helix 3
AA3
A
63 78Right-handed alpha
Helix 4
AA4
A
85 101Right-handed alpha
Helix 5
AA5
A
101 112Right-handed alpha
Helix 6
AA6
A
113 118Right-handed alpha
Helix 7
AA7
A
122 130Right-handed alpha
Helix 8
AA8
A
131 142Right-handed alpha
Helix 9
AA9
A
143 154Right-handed alpha
Helix 10
AB1
A
161 165Right-handed 310
Helix 11
AB2
A
166 207Right-handed alpha
Helix 12
AB3
A
213 229Right-handed alpha
Helix 13
AB4
A
230 245Right-handed alpha
Helix 14
AB5
B
41 51Right-handed alpha
Helix 15
AB6
B
53 62Right-handed alpha
Helix 16
AB7
B
63 78Right-handed alpha
Helix 17
AB8
B
85 112Right-handed alpha
Helix 18
AB9
B
113 118Right-handed alpha
Helix 19
AC1
B
122 142Right-handed alpha
Helix 20
AC2
B
143 155Right-handed alpha
Helix 21
AC3
B
166 208Right-handed alpha
Helix 22
AC4
B
214 229Right-handed alpha
Helix 23
AC5
B
230 245Right-handed alpha
Helix 24
AC6
C
41 62Right-handed alpha
Helix 25
AC7
C
63 78Right-handed alpha
Helix 26
AC8
C
85 101Right-handed alpha
Helix 27
AC9
C
101 112Right-handed alpha
Helix 28
AD1
C
113 118Right-handed alpha
Helix 29
AD2
C
122 142Right-handed alpha
Helix 30
AD3
C
143 155Right-handed alpha
Helix 31
AD4
C
161 165Right-handed 310
Helix 32
AD5
C
166 208Right-handed alpha
Helix 33
AD6
C
214 229Right-handed alpha
Helix 34
AD7
C
230 245Right-handed alpha
Helix 35
AD8
D
41 52Right-handed alpha
Helix 36
AD9
D
53 61Right-handed alpha
Helix 37
AE1
D
63 78Right-handed alpha
Helix 38
AE2
D
85 101Right-handed alpha
Helix 39
AE3
D
101 112Right-handed alpha
Helix 40
AE4
D
113 118Right-handed alpha
Helix 41
AE5
D
122 141Right-handed alpha
Helix 42
AE6
D
143 155Right-handed alpha
Helix 43
AE7
D
166 207Right-handed alpha
Helix 44
AE8
D
213 229Right-handed alpha
Helix 45
AE9
D
230 245Right-handed alpha
Helix 46
AF1
E
41 51Right-handed alpha
Helix 47
AF2
E
53 62Right-handed alpha
Helix 48
AF3
E
63 78Right-handed alpha
Helix 49
AF4
E
85 101Right-handed alpha
Helix 50
AF5
E
101 112Right-handed alpha
Helix 51
AF6
E
122 140Right-handed alpha
Helix 52
AF7
E
143 155Right-handed alpha
Helix 53
AF8
E
161 165Right-handed 310
Helix 54
AF9
E
166 207Right-handed alpha
Helix 55
AG1
E
213 229Right-handed alpha
Helix 56
AG2
E
230 245Right-handed alpha
Helix 57
AG3
F
6 29Right-handed alpha
Helix 58
AG4
F
39 55Right-handed alpha
Helix 59
AG5
F
67 89Right-handed alpha
Helix 60
AG6
F
89 107Right-handed alpha
Helix 61
AG7
F
110 115Right-handed alpha
Helix 62
AG8
F
123 140Right-handed alpha
Helix 63
AG9
F
141 157Right-handed alpha
Helix 64
AH1
F
166 175Right-handed alpha
Helix 65
AH2
F
177 208Right-handed alpha
Helix 66
AH3
F
216 233Right-handed alpha
Helix 67
AH4
F
235 258Right-handed alpha
Helix 68
AH5
F
259 262Right-handed 310
Helix 69
AH6
G
2 42Right-handed alpha
Helix 70
AH7
G
46 49Right-handed 310
Helix 71
AH8
G
50 88Right-handed alpha
Helix 72
AH9
H
2 42Right-handed alpha
Helix 73
AI1
H
50 88Right-handed alpha
Helix 74
AI2
I
2 42Right-handed alpha
Helix 75
AI3
I
46 49Right-handed 310
Helix 76
AI4
I
50 88Right-handed alpha
Helix 77
AI5
J
2 43Right-handed alpha
Helix 78
AI6
J
50 65Right-handed alpha
Helix 79
AI7
J
65 88Right-handed alpha
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There are 2 sheets in PDB entry 9K29. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
30 31first strand
Strand 2
C
35 38anti-parallel
Strand 3
B
26 29anti-parallel
Strand 4
B
37 40anti-parallel
Strand 5
F
2 5anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
26 28first strand
Strand 2
D
35 40anti-parallel
Strand 3
D
25 31anti-parallel
Strand 4
E
35 40anti-parallel
Strand 5
E
26 31anti-parallel
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