Analysis of interatomic Contacts of Structural Units in PDB entry:
9K2J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9K2J entry

There are 3 chains in PDB entry 9K2J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 286
B
 MET 1GLU 286
C
 MET 1GLU 286
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 9K2J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 22Right-handed alpha
Helix 2
AA2
A
32 41Right-handed alpha
Helix 3
AA3
A
51 56Right-handed 310
Helix 4
AA4
A
67 77Right-handed alpha
Helix 5
AA5
A
81 85Right-handed 310
Helix 6
AA6
A
98 113Right-handed alpha
Helix 7
AA7
A
124 130Right-handed alpha
Helix 8
AA8
A
140 147Right-handed alpha
Helix 9
AA9
A
150 155Right-handed alpha
Helix 10
AB1
A
163 195Right-handed alpha
Helix 11
AB2
A
198 208Right-handed alpha
Helix 12
AB3
A
213 225Right-handed alpha
Helix 13
AB4
A
233 251Right-handed alpha
Helix 14
AB5
A
255 272Right-handed alpha
Helix 15
AB6
A
277 285Right-handed 310
Helix 16
AB7
B
11 22Right-handed alpha
Helix 17
AB8
B
32 41Right-handed alpha
Helix 18
AB9
B
51 56Right-handed 310
Helix 19
AC1
B
67 77Right-handed alpha
Helix 20
AC2
B
81 85Right-handed 310
Helix 21
AC3
B
98 113Right-handed alpha
Helix 22
AC4
B
124 130Right-handed alpha
Helix 23
AC5
B
140 147Right-handed alpha
Helix 24
AC6
B
150 155Right-handed alpha
Helix 25
AC7
B
163 195Right-handed alpha
Helix 26
AC8
B
198 207Right-handed alpha
Helix 27
AC9
B
213 225Right-handed alpha
Helix 28
AD1
B
233 251Right-handed alpha
Helix 29
AD2
B
255 271Right-handed alpha
Helix 30
AD3
B
277 285Right-handed 310
Helix 31
AD4
C
11 22Right-handed alpha
Helix 32
AD5
C
32 41Right-handed alpha
Helix 33
AD6
C
51 56Right-handed 310
Helix 34
AD7
C
67 77Right-handed alpha
Helix 35
AD8
C
81 85Right-handed 310
Helix 36
AD9
C
98 113Right-handed alpha
Helix 37
AE1
C
124 130Right-handed alpha
Helix 38
AE2
C
140 147Right-handed alpha
Helix 39
AE3
C
150 155Right-handed alpha
Helix 40
AE4
C
163 195Right-handed alpha
Helix 41
AE5
C
198 208Right-handed alpha
Helix 42
AE6
C
213 225Right-handed alpha
Helix 43
AE7
C
233 250Right-handed alpha
Helix 44
AE8
C
255 272Right-handed alpha
Helix 45
AE9
C
277 285Right-handed 310
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There are 3 sheets in PDB entry 9K2J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 48first strand
Strand 2
A
25 29parallel
Strand 3
A
2 6parallel
Strand 4
A
60 63parallel
Strand 5
A
90 93parallel
Strand 6
A
115 121parallel
Strand 7
A
135 139anti-parallel
Strand 8
A
158 162parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 48first strand
Strand 2
B
25 29parallel
Strand 3
B
2 6parallel
Strand 4
B
60 63parallel
Strand 5
B
90 93parallel
Strand 6
B
115 121parallel
Strand 7
B
135 139anti-parallel
Strand 8
B
158 162parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
46 48first strand
Strand 2
C
25 29parallel
Strand 3
C
2 6parallel
Strand 4
C
60 63parallel
Strand 5
C
90 93parallel
Strand 6
C
115 121parallel
Strand 7
C
135 139anti-parallel
Strand 8
C
158 162parallel
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