Analysis of interatomic Contacts of Structural Units in PDB entry:
9K2R

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9K2R entry

There are 10 chains in PDB entry 9K2R (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 3	PRO 277
B	MET 1	MET 100
C	ILE 1	TYR 11
D	SER 3	PRO 277
E	MET 1	ASP 99
F	ILE 1	TYR 11
G	SER 3	PRO 277
H	MET 1	ASP 99
I	ILE 1	TYR 11
J	ILE 1	ASN 67

There are 40 helices in PDB entry 9K2R. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	50	55	Right-handed alpha
Helix 2	AA2	A	57	86	Right-handed alpha
Helix 3	AA3	A	138	151	Right-handed alpha
Helix 4	AA4	A	152	163	Right-handed alpha
Helix 5	AA5	A	163	176	Right-handed alpha
Helix 6	AA6	A	176	181	Right-handed alpha
Helix 7	AA7	A	226	229	Right-handed 310
Helix 8	AA8	A	254	256	Right-handed 310
Helix 9	AA9	D	50	55	Right-handed alpha
Helix 10	AB1	D	57	86	Right-handed alpha
Helix 11	AB2	D	138	151	Right-handed alpha
Helix 12	AB3	D	152	163	Right-handed alpha
Helix 13	AB4	D	163	176	Right-handed alpha
Helix 14	AB5	D	225	229	Right-handed 310
Helix 15	AB6	D	254	256	Right-handed 310
Helix 16	AB7	G	50	55	Right-handed alpha
Helix 17	AB8	G	57	86	Right-handed alpha
Helix 18	AB9	G	138	151	Right-handed alpha
Helix 19	AC1	G	152	163	Right-handed alpha
Helix 20	AC2	G	163	176	Right-handed alpha
Helix 21	AC3	G	225	229	Right-handed 310
Helix 22	AC4	G	254	256	Right-handed 310
Helix 23	AC5	J	81	85	Right-handed 310
Helix 24	AC6	J	165	168	Right-handed 310
Helix 25	AC7	K	80	84	Right-handed 310
Helix 26	AC8	K	113	117	Right-handed 310
Helix 27	AC9	K	128	136	Right-handed alpha
Helix 28	AD1	K	195	199	Right-handed alpha
Helix 29	AD2	L	81	85	Right-handed 310
Helix 30	AD3	L	184	188	Right-handed 310
Helix 31	AD4	M	80	84	Right-handed 310
Helix 32	AD5	M	113	117	Right-handed 310
Helix 33	AD6	M	128	136	Right-handed alpha
Helix 34	AD7	M	195	199	Right-handed alpha
Helix 35	AD8	N	81	85	Right-handed 310
Helix 36	AD9	N	165	168	Right-handed 310
Helix 37	AE1	O	80	84	Right-handed 310
Helix 38	AE2	O	113	117	Right-handed 310
Helix 39	AE3	O	128	136	Right-handed alpha
Helix 40	AE4	O	195	199	Right-handed alpha

There are 55 sheets in PDB entry 9K2R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9, AG1,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	48	first strand
Strand 2	A	32	38	anti-parallel
Strand 3	A	22	29	anti-parallel
Strand 4	A	4	13	anti-parallel
Strand 5	A	95	104	anti-parallel
Strand 6	A	112	119	anti-parallel
Strand 7	A	122	127	anti-parallel
Strand 8	A	134	136	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	187	194	first strand
Strand 2	A	199	209	anti-parallel
Strand 3	A	242	251	anti-parallel
Strand 4	A	230	231	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	187	194	first strand
Strand 2	A	199	209	anti-parallel
Strand 3	A	242	251	anti-parallel
Strand 4	A	235	236	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	223	224	first strand
Strand 2	A	215	220	anti-parallel
Strand 3	A	258	263	anti-parallel
Strand 4	A	271	273	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	4	first strand
Strand 2	H	2	4	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	7	12	first strand
Strand 2	B	22	31	anti-parallel
Strand 3	B	63	71	anti-parallel
Strand 4	B	51	52	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	7	12	first strand
Strand 2	B	22	31	anti-parallel
Strand 3	B	63	71	anti-parallel
Strand 4	B	56	57	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	46	first strand
Strand 2	B	37	42	anti-parallel
Strand 3	B	79	84	anti-parallel
Strand 4	B	92	95	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	47	48	first strand
Strand 2	D	32	38	anti-parallel
Strand 3	D	19	29	anti-parallel
Strand 4	D	5	15	anti-parallel
Strand 5	D	95	103	anti-parallel
Strand 6	D	112	119	anti-parallel
Strand 7	D	122	127	anti-parallel
Strand 8	D	134	136	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	187	194	first strand
Strand 2	D	199	209	anti-parallel
Strand 3	D	242	251	anti-parallel
Strand 4	D	230	231	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	187	194	first strand
Strand 2	D	199	209	anti-parallel
Strand 3	D	242	251	anti-parallel
Strand 4	D	235	236	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	214	220	first strand
Strand 2	D	258	264	anti-parallel
Strand 3	D	271	273	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	7	12	first strand
Strand 2	E	22	31	anti-parallel
Strand 3	E	63	71	anti-parallel
Strand 4	E	51	52	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	7	12	first strand
Strand 2	E	22	31	anti-parallel
Strand 3	E	63	71	anti-parallel
Strand 4	E	56	57	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	45	46	first strand
Strand 2	E	37	42	anti-parallel
Strand 3	E	79	84	anti-parallel
Strand 4	E	92	95	anti-parallel

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There are 8 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	47	48	first strand
Strand 2	G	32	38	anti-parallel
Strand 3	G	22	29	anti-parallel
Strand 4	G	5	13	anti-parallel
Strand 5	G	95	104	anti-parallel
Strand 6	G	110	119	anti-parallel
Strand 7	G	122	127	anti-parallel
Strand 8	G	134	136	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	187	194	first strand
Strand 2	G	199	209	anti-parallel
Strand 3	G	242	251	anti-parallel
Strand 4	G	230	231	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	187	194	first strand
Strand 2	G	199	209	anti-parallel
Strand 3	G	242	251	anti-parallel
Strand 4	G	235	236	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	214	220	first strand
Strand 2	G	258	264	anti-parallel
Strand 3	G	271	273	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	7	12	first strand
Strand 2	H	22	31	anti-parallel
Strand 3	H	63	71	anti-parallel
Strand 4	H	51	52	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	7	12	first strand
Strand 2	H	22	31	anti-parallel
Strand 3	H	63	71	anti-parallel
Strand 4	H	56	57	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	45	46	first strand
Strand 2	H	37	42	anti-parallel
Strand 3	H	79	84	anti-parallel
Strand 4	H	92	95	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	5	7	first strand
Strand 2	J	19	24	anti-parallel
Strand 3	J	72	77	anti-parallel
Strand 4	J	62	67	anti-parallel
Strand 5	J	56	59	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	14	first strand
Strand 2	J	106	111	parallel
Strand 3	J	86	94	anti-parallel
Strand 4	J	33	38	anti-parallel
Strand 5	J	45	50	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	14	first strand
Strand 2	J	106	111	parallel
Strand 3	J	86	94	anti-parallel
Strand 4	J	99	102	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	120	124	first strand
Strand 2	J	133	138	anti-parallel
Strand 3	J	169	178	anti-parallel
Strand 4	J	155	156	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	120	124	first strand
Strand 2	J	133	138	anti-parallel
Strand 3	J	169	178	anti-parallel
Strand 4	J	160	164	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	3	5	first strand
Strand 2	K	17	22	anti-parallel
Strand 3	K	74	76	anti-parallel
Strand 4	K	63	64	anti-parallel

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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	8	12	first strand
Strand 2	K	106	111	parallel
Strand 3	K	85	92	anti-parallel
Strand 4	K	29	36	anti-parallel
Strand 5	K	40	49	anti-parallel
Strand 6	K	52	55	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	8	12	first strand
Strand 2	K	106	111	parallel
Strand 3	K	85	92	anti-parallel
Strand 4	K	101	102	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	121	125	first strand
Strand 2	K	137	147	anti-parallel
Strand 3	K	185	194	anti-parallel
Strand 4	K	167	169	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	121	125	first strand
Strand 2	K	137	147	anti-parallel
Strand 3	K	185	194	anti-parallel
Strand 4	K	174	175	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	161	163	first strand
Strand 2	K	152	158	anti-parallel
Strand 3	K	204	211	anti-parallel
Strand 4	K	230	237	anti-parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	5	7	first strand
Strand 2	L	19	24	anti-parallel
Strand 3	L	72	77	anti-parallel
Strand 4	L	62	67	anti-parallel
Strand 5	L	56	59	anti-parallel

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There are 5 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	14	first strand
Strand 2	L	106	111	parallel
Strand 3	L	86	94	anti-parallel
Strand 4	L	33	38	anti-parallel
Strand 5	L	45	50	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	14	first strand
Strand 2	L	106	111	parallel
Strand 3	L	86	94	anti-parallel
Strand 4	L	99	102	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	120	124	first strand
Strand 2	L	133	138	anti-parallel
Strand 3	L	169	178	anti-parallel
Strand 4	L	155	156	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	120	124	first strand
Strand 2	L	133	138	anti-parallel
Strand 3	L	169	178	anti-parallel
Strand 4	L	161	164	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	3	5	first strand
Strand 2	M	17	22	anti-parallel
Strand 3	M	74	76	anti-parallel
Strand 4	M	63	64	anti-parallel

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There are 6 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	8	12	first strand
Strand 2	M	106	111	parallel
Strand 3	M	85	92	anti-parallel
Strand 4	M	29	36	anti-parallel
Strand 5	M	40	49	anti-parallel
Strand 6	M	52	55	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	8	12	first strand
Strand 2	M	106	111	parallel
Strand 3	M	85	92	anti-parallel
Strand 4	M	101	102	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	121	125	first strand
Strand 2	M	137	147	anti-parallel
Strand 3	M	185	194	anti-parallel
Strand 4	M	167	169	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	121	125	first strand
Strand 2	M	137	147	anti-parallel
Strand 3	M	185	194	anti-parallel
Strand 4	M	174	175	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	161	163	first strand
Strand 2	M	152	158	anti-parallel
Strand 3	M	204	211	anti-parallel
Strand 4	M	230	237	anti-parallel

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There are 5 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	5	7	first strand
Strand 2	N	19	24	anti-parallel
Strand 3	N	72	77	anti-parallel
Strand 4	N	62	67	anti-parallel
Strand 5	N	56	59	anti-parallel

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There are 5 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	10	14	first strand
Strand 2	N	106	111	parallel
Strand 3	N	87	94	anti-parallel
Strand 4	N	33	38	anti-parallel
Strand 5	N	44	50	anti-parallel

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There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	10	14	first strand
Strand 2	N	106	111	parallel
Strand 3	N	87	94	anti-parallel
Strand 4	N	99	102	anti-parallel

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There are 3 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	120	124	first strand
Strand 2	N	133	138	anti-parallel
Strand 3	N	173	178	anti-parallel

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There are 2 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	162	164	first strand
Strand 2	N	169	171	anti-parallel

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There are 4 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	3	5	first strand
Strand 2	O	17	22	anti-parallel
Strand 3	O	74	76	anti-parallel
Strand 4	O	63	64	anti-parallel

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There are 6 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	8	12	first strand
Strand 2	O	106	111	parallel
Strand 3	O	85	92	anti-parallel
Strand 4	O	29	36	anti-parallel
Strand 5	O	40	49	anti-parallel
Strand 6	O	52	55	anti-parallel

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There are 4 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	8	12	first strand
Strand 2	O	106	111	parallel
Strand 3	O	85	92	anti-parallel
Strand 4	O	100	102	anti-parallel

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There are 4 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	121	125	first strand
Strand 2	O	137	147	anti-parallel
Strand 3	O	185	194	anti-parallel
Strand 4	O	167	169	anti-parallel

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There are 4 strands in AF9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	121	125	first strand
Strand 2	O	137	147	anti-parallel
Strand 3	O	185	194	anti-parallel
Strand 4	O	174	175	anti-parallel

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There are 4 strands in AG1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	161	163	first strand
Strand 2	O	152	158	anti-parallel
Strand 3	O	204	211	anti-parallel
Strand 4	O	230	237	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9K2R

Analysis of interatomic Contacts of Structural Units in PDB entry:
9K2R