Analysis of interatomic Contacts of Structural Units in PDB entry:
9K32


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9K32 entry

There are 4 chains in PDB entry 9K32 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3LEU 735
B
 G -20 U 159
C
 C -10 G 24
D
 C -24 G 10
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 9K32. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
39 74Right-handed alpha
Helix 2
AA2
A
80 90Right-handed alpha
Helix 3
AA3
A
102 109Right-handed alpha
Helix 4
AA4
A
110 120Right-handed alpha
Helix 5
AA5
A
126 141Right-handed alpha
Helix 6
AA6
A
144 157Right-handed alpha
Helix 7
AA7
A
181 184Right-handed 310
Helix 8
AA8
A
185 195Right-handed alpha
Helix 9
AA9
A
200 214Right-handed alpha
Helix 10
AB1
A
215 227Right-handed alpha
Helix 11
AB2
A
232 244Right-handed alpha
Helix 12
AB3
A
253 258Right-handed alpha
Helix 13
AB4
A
259 263Right-handed 310
Helix 14
AB5
A
274 292Right-handed alpha
Helix 15
AB6
A
309 314Right-handed alpha
Helix 16
AB7
A
321 326Right-handed 310
Helix 17
AB8
A
335 345Right-handed alpha
Helix 18
AB9
A
375 377Right-handed 310
Helix 19
AC1
A
384 391Right-handed alpha
Helix 20
AC2
A
394 399Right-handed alpha
Helix 21
AC3
A
403 410Right-handed alpha
Helix 22
AC4
A
412 421Right-handed alpha
Helix 23
AC5
A
422 427Right-handed 310
Helix 24
AC6
A
431 437Right-handed alpha
Helix 25
AC7
A
440 453Right-handed alpha
Helix 26
AC8
A
463 474Right-handed alpha
Helix 27
AC9
A
484 495Right-handed alpha
Helix 28
AD1
A
550 554Right-handed 310
Helix 29
AD2
A
562 564Right-handed 310
Helix 30
AD3
A
568 572Right-handed 310
Helix 31
AD4
A
574 588Right-handed alpha
Helix 32
AD5
A
597 604Right-handed alpha
Helix 33
AD6
A
623 625Right-handed 310
Helix 34
AD7
A
728 730Right-handed 310
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There are 8 sheets in PDB entry 9K32. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
459 462first strand
Strand 2
A
300 304parallel
Strand 3
A
5 10parallel
Strand 4
A
15 22anti-parallel
Strand 5
A
27 35anti-parallel
Strand 6
A
512 513parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
459 462first strand
Strand 2
A
300 304parallel
Strand 3
A
5 10parallel
Strand 4
A
15 22anti-parallel
Strand 5
A
27 35anti-parallel
Strand 6
A
529 530parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
360 364first strand
Strand 2
A
379 383anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
556 560first strand
Strand 2
A
614 618anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
627 630first strand
Strand 2
A
633 636anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
654 660first strand
Strand 2
A
641 648anti-parallel
Strand 3
A
679 683anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
696 698first strand
Strand 2
A
688 691anti-parallel
Strand 3
A
732 733anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
707 715first strand
Strand 2
A
719 726anti-parallel
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