Analysis of interatomic Contacts of Structural Units in PDB entry:
9K35


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9K35 entry

There are 2 chains in PDB entry 9K35 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 5ILE 179
A
 ASN 181PRO 322
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 9K35. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 24Right-handed alpha
Helix 2
AA2
A
44 46Right-handed 310
Helix 3
AA3
A
52 57Right-handed alpha
Helix 4
AA4
A
74 89Right-handed alpha
Helix 5
AA5
A
96 112Right-handed alpha
Helix 6
AA6
A
128 135Right-handed 310
Helix 7
AA7
A
151 158Right-handed alpha
Helix 8
AA8
A
184 198Right-handed alpha
Helix 9
AA9
A
237 250Right-handed alpha
Helix 10
AB1
A
260 265Right-handed alpha
Helix 11
AB2
A
296 309Right-handed alpha
Helix 12
AB3
A
310 312Right-handed 310
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There are 4 sheets in PDB entry 9K35. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 42first strand
Strand 2
A
33 36anti-parallel
Strand 3
A
138 145anti-parallel
Strand 4
A
116 123anti-parallel
Strand 5
A
60 63anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 42first strand
Strand 2
A
33 36anti-parallel
Strand 3
A
138 145anti-parallel
Strand 4
A
116 123anti-parallel
Strand 5
A
66 68anti-parallel
Strand 6
A
71 73anti-parallel
Strand 7
A
316 318anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 203first strand
Strand 2
A
159 163parallel
Strand 3
A
278 285parallel
Strand 4
A
269 274anti-parallel
Strand 5
A
217 223anti-parallel
Strand 6
A
226 229anti-parallel
Strand 7
A
253 256parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
213 214first strand
Strand 2
A
217 223anti-parallel
Strand 3
A
269 274anti-parallel
Strand 4
A
278 285anti-parallel
Strand 5
A
288 289anti-parallel
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