Analysis of interatomic Contacts of Structural Units in PDB entry:
9K6M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9K6M entry

There are 2 chains in PDB entry 9K6M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 131ARG 436
B
 SER 131ARG 436
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 9K6M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
132 141Right-handed alpha
Helix 2
AA2
A
152 160Right-handed alpha
Helix 3
AA3
A
184 191Right-handed alpha
Helix 4
AA4
A
199 212Right-handed alpha
Helix 5
AA5
A
213 215Right-handed 310
Helix 6
AA6
A
216 225Right-handed alpha
Helix 7
AA7
A
233 247Right-handed alpha
Helix 8
AA8
A
269 274Right-handed alpha
Helix 9
AA9
A
282 305Right-handed alpha
Helix 10
AB1
A
314 325Right-handed alpha
Helix 11
AB2
A
332 339Right-handed alpha
Helix 12
AB3
A
354 366Right-handed alpha
Helix 13
AB4
A
366 381Right-handed alpha
Helix 14
AB5
A
385 398Right-handed alpha
Helix 15
AB6
A
402 414Right-handed alpha
Helix 16
AB7
A
426 430Right-handed 310
Helix 17
AB8
B
132 141Right-handed alpha
Helix 18
AB9
B
152 161Right-handed alpha
Helix 19
AC1
B
184 191Right-handed alpha
Helix 20
AC2
B
199 212Right-handed alpha
Helix 21
AC3
B
213 215Right-handed 310
Helix 22
AC4
B
216 225Right-handed alpha
Helix 23
AC5
B
233 238Right-handed alpha
Helix 24
AC6
B
238 246Right-handed alpha
Helix 25
AC7
B
282 304Right-handed alpha
Helix 26
AC8
B
314 325Right-handed alpha
Helix 27
AC9
B
332 337Right-handed alpha
Helix 28
AD1
B
354 366Right-handed alpha
Helix 29
AD2
B
366 379Right-handed alpha
Helix 30
AD3
B
385 398Right-handed alpha
Helix 31
AD4
B
402 414Right-handed alpha
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There are 4 sheets in PDB entry 9K6M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 145first strand
Strand 2
A
148 150anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
312 313first strand
Strand 2
A
352 353anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
143 145first strand
Strand 2
B
148 150anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
312 313first strand
Strand 2
B
352 353anti-parallel
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