Analysis of interatomic Contacts of Structural Units in PDB entry:
9K6P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9K6P entry

There are 3 chains in PDB entry 9K6P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 20ALA 859
B
 U 1 C 10
C
 G 10 U 18
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 9K6P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
67 82Right-handed alpha
Helix 2
AA2
A
82 87Right-handed alpha
Helix 3
AA3
A
140 148Right-handed alpha
Helix 4
AA4
A
156 166Right-handed alpha
Helix 5
AA5
A
167 174Right-handed alpha
Helix 6
AA6
A
229 237Right-handed alpha
Helix 7
AA7
A
251 262Right-handed alpha
Helix 8
AA8
A
357 369Right-handed alpha
Helix 9
AA9
A
371 386Right-handed alpha
Helix 10
AB1
A
391 397Right-handed alpha
Helix 11
AB2
A
463 481Right-handed alpha
Helix 12
AB3
A
501 512Right-handed alpha
Helix 13
AB4
A
526 539Right-handed alpha
Helix 14
AB5
A
556 572Right-handed alpha
Helix 15
AB6
A
641 658Right-handed alpha
Helix 16
AB7
A
672 674Right-handed 310
Helix 17
AB8
A
675 695Right-handed alpha
Helix 18
AB9
A
717 721Right-handed 310
Helix 19
AC1
A
775 788Right-handed alpha
Helix 20
AC2
A
800 816Right-handed alpha
Helix 21
AC3
A
839 844Right-handed alpha
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There are 9 sheets in PDB entry 9K6P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
408 412first strand
Strand 2
A
36 42anti-parallel
Strand 3
A
715 716anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 48first strand
Strand 2
A
400 405anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 94first strand
Strand 2
A
99 102anti-parallel
Strand 3
A
54 62anti-parallel
Strand 4
A
126 138anti-parallel
Strand 5
A
113 119anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
197 199first strand
Strand 2
A
222 224anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 206first strand
Strand 2
A
215 219anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
267 268first strand
Strand 2
A
345 346anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
427 428first strand
Strand 2
A
418 419anti-parallel
Strand 3
A
577 578anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
491 494first strand
Strand 2
A
452 455parallel
Strand 3
A
518 522parallel
Strand 4
A
544 548parallel
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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
625 632first strand
Strand 2
A
610 617anti-parallel
Strand 3
A
591 598anti-parallel
Strand 4
A
663 668parallel
Strand 5
A
701 707parallel
Strand 6
A
763 770anti-parallel
Strand 7
A
749 750anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il