Analysis of interatomic Contacts of Structural Units in PDB entry:
9K6S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9K6S entry

There are 3 chains in PDB entry 9K6S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 410ALA 859
B
 U 1 G 19
C
 C 3 U 21
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 12 helices in PDB entry 9K6S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
463 481Right-handed alpha
Helix 2
AA2
A
500 510Right-handed alpha
Helix 3
AA3
A
526 538Right-handed alpha
Helix 4
AA4
A
549 554Right-handed alpha
Helix 5
AA5
A
556 572Right-handed alpha
Helix 6
AA6
A
584 589Right-handed 310
Helix 7
AA7
A
641 658Right-handed alpha
Helix 8
AA8
A
672 680Right-handed 310
Helix 9
AA9
A
682 693Right-handed alpha
Helix 10
AB1
A
775 789Right-handed alpha
Helix 11
AB2
A
800 815Right-handed alpha
Helix 12
AB3
A
840 846Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 9K6S. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
491 494first strand
Strand 2
A
452 455parallel
Strand 3
A
517 522parallel
Strand 4
A
543 548parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
625 632first strand
Strand 2
A
610 617anti-parallel
Strand 3
A
592 597anti-parallel
Strand 4
A
663 669parallel
Strand 5
A
701 707parallel
Strand 6
A
765 767anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il