Analysis of interatomic Contacts of Structural Units in PDB entry:
9K6T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9K6T entry

There are 3 chains in PDB entry 9K6T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 410ALA 859
B
 U 1 U 21
C
 A 1 U 21
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 9K6T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
463 481Right-handed alpha
Helix 2
AA2
A
501 510Right-handed alpha
Helix 3
AA3
A
526 538Right-handed alpha
Helix 4
AA4
A
549 554Right-handed alpha
Helix 5
AA5
A
556 571Right-handed alpha
Helix 6
AA6
A
584 589Right-handed 310
Helix 7
AA7
A
641 658Right-handed alpha
Helix 8
AA8
A
675 692Right-handed alpha
Helix 9
AA9
A
775 789Right-handed alpha
Helix 10
AB1
A
800 817Right-handed alpha
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There are 3 sheets in PDB entry 9K6T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
411 412first strand
Strand 2
A
734 736anti-parallel
Strand 3
A
746 751anti-parallel
Strand 4
A
763 767anti-parallel
Strand 5
A
704 708anti-parallel
Strand 6
A
665 669parallel
Strand 7
A
593 599parallel
Strand 8
A
610 617anti-parallel
Strand 9
A
625 632anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
418 419first strand
Strand 2
A
427 428anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
491 494first strand
Strand 2
A
451 455parallel
Strand 3
A
517 522parallel
Strand 4
A
544 548parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il