Analysis of interatomic Contacts of Structural Units in PDB entry:
9K6W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9K6W entry

There are 2 chains in PDB entry 9K6W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 175SER 381
H
 LEU 175SER 381
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 9K6W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
175 179Right-handed 310
Helix 2
AA2
A
324 328Right-handed 310
Helix 3
AA3
A
344 352Right-handed alpha
Helix 4
AA4
H
344 352Right-handed alpha
Helix 5
AA5
H
355 359Right-handed 310
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There are 6 sheets in PDB entry 9K6W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
288 293first strand
Strand 2
A
280 285anti-parallel
Strand 3
A
267 275anti-parallel
Strand 4
A
206 214anti-parallel
Strand 5
A
331 339anti-parallel
Strand 6
A
182 185anti-parallel
Strand 7
A
378 380anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
225 228first strand
Strand 2
A
307 310anti-parallel
Strand 3
A
193 197anti-parallel
Strand 4
A
370 374anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 223first strand
Strand 2
A
236 240anti-parallel
Strand 3
A
245 249anti-parallel
Strand 4
A
255 257anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
258 259first strand
Strand 2
H
244 246anti-parallel
Strand 3
H
236 240anti-parallel
Strand 4
H
222 228anti-parallel
Strand 5
H
307 310anti-parallel
Strand 6
H
193 196anti-parallel
Strand 7
H
371 374anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
206 208first strand
Strand 2
H
267 275anti-parallel
Strand 3
H
280 285anti-parallel
Strand 4
H
288 293anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
206 208first strand
Strand 2
H
267 275anti-parallel
Strand 3
H
211 215anti-parallel
Strand 4
H
331 334anti-parallel
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