Analysis of interatomic Contacts of Structural Units in PDB entry:
9K7C

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9K7C entry

There are 3 chains in PDB entry 9K7C (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 2	GLU 477
B	MET 1	GLU 477
C	LYS 2	PHE 222

There are119 helices in PDB entry 9K7C. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	28	37	Right-handed alpha
Helix 2	AA2	A	39	44	Right-handed alpha
Helix 3	AA3	A	45	47	Right-handed 310
Helix 4	AA4	A	57	69	Right-handed alpha
Helix 5	AA5	A	75	82	Right-handed alpha
Helix 6	AA6	A	83	87	Right-handed 310
Helix 7	AA7	A	88	103	Right-handed alpha
Helix 8	AA8	A	105	109	Right-handed 310
Helix 9	AA9	A	110	118	Right-handed alpha
Helix 10	AB1	A	123	138	Right-handed alpha
Helix 11	AB2	A	140	147	Right-handed alpha
Helix 12	AB3	A	147	154	Right-handed alpha
Helix 13	AB4	A	158	175	Right-handed alpha
Helix 14	AB5	A	175	186	Right-handed alpha
Helix 15	AB6	A	200	206	Right-handed alpha
Helix 16	AB7	A	207	213	Right-handed 310
Helix 17	AB8	A	226	246	Right-handed alpha
Helix 18	AB9	A	254	258	Right-handed 310
Helix 19	AC1	A	260	270	Right-handed alpha
Helix 20	AC2	A	278	286	Right-handed alpha
Helix 21	AC3	A	307	317	Right-handed alpha
Helix 22	AC4	A	318	321	Right-handed 310
Helix 23	AC5	A	322	341	Right-handed alpha
Helix 24	AC6	A	356	363	Right-handed 310
Helix 25	AC7	A	364	377	Right-handed alpha
Helix 26	AC8	A	385	392	Right-handed alpha
Helix 27	AC9	A	419	435	Right-handed alpha
Helix 28	AD1	A	439	445	Right-handed alpha
Helix 29	AD2	A	446	453	Right-handed alpha
Helix 30	AD3	A	460	476	Right-handed alpha
Helix 31	AD4	B	28	37	Right-handed alpha
Helix 32	AD5	B	39	44	Right-handed alpha
Helix 33	AD6	B	45	47	Right-handed 310
Helix 34	AD7	B	57	69	Right-handed alpha
Helix 35	AD8	B	75	82	Right-handed alpha
Helix 36	AD9	B	83	87	Right-handed 310
Helix 37	AE1	B	88	103	Right-handed alpha
Helix 38	AE2	B	105	109	Right-handed 310
Helix 39	AE3	B	110	118	Right-handed alpha
Helix 40	AE4	B	123	138	Right-handed alpha
Helix 41	AE5	B	142	147	Right-handed alpha
Helix 42	AE6	B	147	154	Right-handed alpha
Helix 43	AE7	B	158	175	Right-handed alpha
Helix 44	AE8	B	175	186	Right-handed alpha
Helix 45	AE9	B	200	206	Right-handed alpha
Helix 46	AF1	B	207	213	Right-handed 310
Helix 47	AF2	B	226	246	Right-handed alpha
Helix 48	AF3	B	254	258	Right-handed 310
Helix 49	AF4	B	260	270	Right-handed alpha
Helix 50	AF5	B	278	286	Right-handed alpha
Helix 51	AF6	B	307	317	Right-handed alpha
Helix 52	AF7	B	318	321	Right-handed 310
Helix 53	AF8	B	322	341	Right-handed alpha
Helix 54	AF9	B	356	363	Right-handed 310
Helix 55	AG1	B	364	378	Right-handed alpha
Helix 56	AG2	B	385	392	Right-handed alpha
Helix 57	AG3	B	419	435	Right-handed alpha
Helix 58	AG4	B	439	445	Right-handed alpha
Helix 59	AG5	B	446	453	Right-handed alpha
Helix 60	AG6	B	460	475	Right-handed alpha
Helix 61	AG7	C	28	37	Right-handed alpha
Helix 62	AG8	C	39	44	Right-handed alpha
Helix 63	AG9	C	45	47	Right-handed 310
Helix 64	AH1	C	57	69	Right-handed alpha
Helix 65	AH2	C	75	82	Right-handed alpha
Helix 66	AH3	C	83	87	Right-handed 310
Helix 67	AH4	C	88	103	Right-handed alpha
Helix 68	AH5	C	105	109	Right-handed 310
Helix 69	AH6	C	110	118	Right-handed alpha
Helix 70	AH7	C	123	138	Right-handed alpha
Helix 71	AH8	C	140	147	Right-handed alpha
Helix 72	AH9	C	147	154	Right-handed alpha
Helix 73	AI1	C	158	175	Right-handed alpha
Helix 74	AI2	C	175	186	Right-handed alpha
Helix 75	AI3	C	200	206	Right-handed alpha
Helix 76	AI4	C	207	213	Right-handed 310
Helix 77	AI5	C	226	246	Right-handed alpha
Helix 78	AI6	C	254	258	Right-handed 310
Helix 79	AI7	C	260	270	Right-handed alpha
Helix 80	AI8	C	278	286	Right-handed alpha
Helix 81	AI9	C	307	317	Right-handed alpha
Helix 82	AJ1	C	318	321	Right-handed 310
Helix 83	AJ2	C	322	341	Right-handed alpha
Helix 84	AJ3	C	356	363	Right-handed 310
Helix 85	AJ4	C	364	378	Right-handed alpha
Helix 86	AJ5	C	385	392	Right-handed alpha
Helix 87	AJ6	C	419	434	Right-handed alpha
Helix 88	AJ7	C	439	445	Right-handed alpha
Helix 89	AJ8	C	446	453	Right-handed alpha
Helix 90	AJ9	C	460	476	Right-handed alpha
Helix 91	AK1	D	28	37	Right-handed alpha
Helix 92	AK2	D	39	48	Right-handed alpha
Helix 93	AK3	D	57	69	Right-handed alpha
Helix 94	AK4	D	75	82	Right-handed alpha
Helix 95	AK5	D	83	87	Right-handed 310
Helix 96	AK6	D	88	102	Right-handed alpha
Helix 97	AK7	D	105	109	Right-handed 310
Helix 98	AK8	D	110	118	Right-handed alpha
Helix 99	AK9	D	123	138	Right-handed alpha
Helix 100	AL1	D	141	145	Right-handed 310
Helix 101	AL2	D	147	154	Right-handed alpha
Helix 102	AL3	D	158	175	Right-handed alpha
Helix 103	AL4	D	175	186	Right-handed alpha
Helix 104	AL5	D	200	206	Right-handed alpha
Helix 105	AL6	D	207	213	Right-handed 310
Helix 106	AL7	D	226	246	Right-handed alpha
Helix 107	AL8	D	254	258	Right-handed 310
Helix 108	AL9	D	260	270	Right-handed alpha
Helix 109	AM1	D	278	286	Right-handed alpha
Helix 110	AM2	D	307	317	Right-handed alpha
Helix 111	AM3	D	318	321	Right-handed 310
Helix 112	AM4	D	322	341	Right-handed alpha
Helix 113	AM5	D	356	363	Right-handed 310
Helix 114	AM6	D	364	376	Right-handed alpha
Helix 115	AM7	D	385	392	Right-handed alpha
Helix 116	AM8	D	419	435	Right-handed alpha
Helix 117	AM9	D	439	445	Right-handed alpha
Helix 118	AN1	D	446	453	Right-handed alpha
Helix 119	AN2	D	460	476	Right-handed alpha

There are 16 sheets in PDB entry 9K7C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	191	192	first strand
Strand 2	A	53	56	parallel
Strand 3	A	4	12	parallel
Strand 4	A	346	352	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	191	192	first strand
Strand 2	A	53	56	parallel
Strand 3	A	4	12	parallel
Strand 4	A	381	383	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	24	25	first strand
Strand 2	A	73	74	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	251	252	first strand
Strand 2	A	274	277	parallel
Strand 3	A	301	305	parallel
Strand 4	A	294	297	anti-parallel
Strand 5	A	397	400	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	191	192	first strand
Strand 2	B	53	56	parallel
Strand 3	B	4	12	parallel
Strand 4	B	346	352	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	191	192	first strand
Strand 2	B	53	56	parallel
Strand 3	B	4	12	parallel
Strand 4	B	381	383	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	24	25	first strand
Strand 2	B	73	74	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	251	252	first strand
Strand 2	B	274	277	parallel
Strand 3	B	301	305	parallel
Strand 4	B	294	297	anti-parallel
Strand 5	B	397	400	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	191	192	first strand
Strand 2	C	53	56	parallel
Strand 3	C	4	12	parallel
Strand 4	C	346	352	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	191	192	first strand
Strand 2	C	53	56	parallel
Strand 3	C	4	12	parallel
Strand 4	C	381	383	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	24	25	first strand
Strand 2	C	73	74	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	251	252	first strand
Strand 2	C	274	277	parallel
Strand 3	C	301	305	parallel
Strand 4	C	294	297	anti-parallel
Strand 5	C	397	400	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	191	192	first strand
Strand 2	D	53	56	parallel
Strand 3	D	4	12	parallel
Strand 4	D	346	352	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	191	192	first strand
Strand 2	D	53	56	parallel
Strand 3	D	4	12	parallel
Strand 4	D	381	383	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	24	25	first strand
Strand 2	D	73	74	parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	251	252	first strand
Strand 2	D	274	277	parallel
Strand 3	D	301	305	parallel
Strand 4	D	294	297	anti-parallel
Strand 5	D	397	400	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9K7C

Analysis of interatomic Contacts of Structural Units in PDB entry:
9K7C