Analysis of interatomic Contacts of Structural Units in PDB entry:
9K8Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9K8Q entry

There are 3 chains in PDB entry 9K8Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 9VAL 280
B
 ALA 10VAL 280
C
 PRO 7VAL 280
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 9K8Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 15Right-handed alpha
Helix 2
AA2
A
30 42Right-handed alpha
Helix 3
AA3
A
52 61Right-handed alpha
Helix 4
AA4
A
78 93Right-handed alpha
Helix 5
AA5
A
118 129Right-handed alpha
Helix 6
AA6
A
131 162Right-handed alpha
Helix 7
AA7
A
177 183Right-handed 310
Helix 8
AA8
A
185 209Right-handed alpha
Helix 9
AA9
A
255 268Right-handed alpha
Helix 10
AB1
B
11 15Right-handed alpha
Helix 11
AB2
B
31 42Right-handed alpha
Helix 12
AB3
B
52 60Right-handed alpha
Helix 13
AB4
B
78 93Right-handed alpha
Helix 14
AB5
B
118 128Right-handed alpha
Helix 15
AB6
B
131 162Right-handed alpha
Helix 16
AB7
B
177 182Right-handed 310
Helix 17
AB8
B
185 209Right-handed alpha
Helix 18
AB9
B
257 268Right-handed alpha
Helix 19
AC1
B
269 273Right-handed 310
Helix 20
AC2
C
10 15Right-handed alpha
Helix 21
AC3
C
30 42Right-handed alpha
Helix 22
AC4
C
52 63Right-handed alpha
Helix 23
AC5
C
78 93Right-handed alpha
Helix 24
AC6
C
118 128Right-handed alpha
Helix 25
AC7
C
131 163Right-handed alpha
Helix 26
AC8
C
177 182Right-handed 310
Helix 27
AC9
C
185 209Right-handed alpha
Helix 28
AD1
C
255 268Right-handed alpha
Helix 29
AD2
C
269 272Right-handed 310
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There are 3 sheets in PDB entry 9K8Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 73first strand
Strand 2
A
44 50parallel
Strand 3
A
20 24parallel
Strand 4
A
98 103parallel
Strand 5
A
169 175parallel
Strand 6
A
213 218parallel
Strand 7
A
278 279parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
69 73first strand
Strand 2
B
44 50parallel
Strand 3
B
20 25parallel
Strand 4
B
98 103parallel
Strand 5
B
169 175parallel
Strand 6
B
213 218parallel
Strand 7
B
278 279parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
69 73first strand
Strand 2
C
44 50parallel
Strand 3
C
20 25parallel
Strand 4
C
98 103parallel
Strand 5
C
169 175parallel
Strand 6
C
213 218parallel
Strand 7
C
278 279parallel
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