Analysis of interatomic Contacts of Structural Units in PDB entry:
9K8R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9K8R entry

There are 2 chains in PDB entry 9K8R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 6TYR 293
B
 PRO 7TYR 293
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 9K8R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 15Right-handed alpha
Helix 2
AA2
A
29 42Right-handed alpha
Helix 3
AA3
A
52 63Right-handed alpha
Helix 4
AA4
A
78 93Right-handed alpha
Helix 5
AA5
A
118 129Right-handed alpha
Helix 6
AA6
A
130 142Right-handed alpha
Helix 7
AA7
A
142 163Right-handed alpha
Helix 8
AA8
A
176 180Right-handed 310
Helix 9
AA9
A
187 209Right-handed alpha
Helix 10
AB1
A
228 236Right-handed alpha
Helix 11
AB2
A
239 247Right-handed alpha
Helix 12
AB3
A
255 268Right-handed alpha
Helix 13
AB4
A
284 288Right-handed 310
Helix 14
AB5
B
10 15Right-handed alpha
Helix 15
AB6
B
29 42Right-handed alpha
Helix 16
AB7
B
52 64Right-handed alpha
Helix 17
AB8
B
78 93Right-handed alpha
Helix 18
AB9
B
118 129Right-handed alpha
Helix 19
AC1
B
136 142Right-handed alpha
Helix 20
AC2
B
142 163Right-handed alpha
Helix 21
AC3
B
176 180Right-handed 310
Helix 22
AC4
B
187 209Right-handed alpha
Helix 23
AC5
B
228 236Right-handed alpha
Helix 24
AC6
B
239 247Right-handed alpha
Helix 25
AC7
B
255 268Right-handed alpha
Helix 26
AC8
B
269 274Right-handed 310
Helix 27
AC9
B
284 288Right-handed 310
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There are 2 sheets in PDB entry 9K8R. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 71first strand
Strand 2
A
45 49parallel
Strand 3
A
21 25parallel
Strand 4
A
98 101parallel
Strand 5
A
169 174parallel
Strand 6
A
213 220parallel
Strand 7
A
278 281parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
69 71first strand
Strand 2
B
45 49parallel
Strand 3
B
21 25parallel
Strand 4
B
98 101parallel
Strand 5
B
169 174parallel
Strand 6
B
213 220parallel
Strand 7
B
278 281parallel
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