Analysis of interatomic Contacts of Structural Units in PDB entry:
9K8W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9K8W entry

There are 2 chains in PDB entry 9K8W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 45LEU 233
A
 VAL 237THR 461
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 15 helices in PDB entry 9K8W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
50 69Right-handed alpha
Helix 2
AA2
A
80 83Right-handed 310
Helix 3
AA3
A
171 178Right-handed 310
Helix 4
AA4
A
225 230Right-handed 310
Helix 5
AA5
A
237 241Right-handed 310
Helix 6
AA6
A
244 250Right-handed 310
Helix 7
AA7
A
251 256Right-handed alpha
Helix 8
AA8
A
320 335Right-handed alpha
Helix 9
AA9
A
343 353Right-handed alpha
Helix 10
AB1
A
359 369Right-handed alpha
Helix 11
AB2
A
380 393Right-handed alpha
Helix 12
AB3
A
396 408Right-handed alpha
Helix 13
AB4
A
417 428Right-handed alpha
Helix 14
AB5
A
434 443Right-handed alpha
Helix 15
AB6
A
452 460Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 9K8W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 79first strand
Strand 2
A
84 94anti-parallel
Strand 3
A
100 111anti-parallel
Strand 4
A
261 269anti-parallel
Strand 5
A
274 284anti-parallel
Strand 6
A
287 297anti-parallel
Strand 7
A
181 191parallel
Strand 8
A
194 205anti-parallel
Strand 9
A
210 217anti-parallel
Strand 10
A
141 151anti-parallel
Strand 11
A
123 132anti-parallel
Strand 12
A
74 79anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
341 342first strand
Strand 2
A
378 379anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
415 416first strand
Strand 2
A
450 451anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il