Analysis of interatomic Contacts of Structural Units in PDB entry:
9K8Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9K8Y entry

There is 1 chain in PDB entry 9K8Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 31PHE 406
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 9K8Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
31 59Right-handed alpha
Helix 2
AA2
A
62 83Right-handed alpha
Helix 3
AA3
A
86 88Right-handed 310
Helix 4
AA4
A
89 111Right-handed alpha
Helix 5
AA5
A
112 145Right-handed alpha
Helix 6
AA6
A
149 175Right-handed alpha
Helix 7
AA7
A
185 210Right-handed alpha
Helix 8
AA8
A
231 257Right-handed alpha
Helix 9
AA9
A
262 270Right-handed alpha
Helix 10
AB1
A
272 292Right-handed alpha
Helix 11
AB2
A
293 297Right-handed 310
Helix 12
AB3
A
299 306Right-handed 310
Helix 13
AB4
A
308 319Right-handed alpha
Helix 14
AB5
A
321 332Right-handed alpha
Helix 15
AB6
A
334 339Right-handed alpha
Helix 16
AB7
A
339 358Right-handed alpha
Helix 17
AB8
A
359 368Right-handed alpha
Helix 18
AB9
A
374 400Right-handed alpha
Helix 19
AC1
A
401 406Right-handed 310
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There is 1 sheet (AA1) in PDB entry 9K8Y.

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
179 180first strand
Strand 2
A
183 184anti-parallel
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