Analysis of interatomic Contacts of Structural Units in PDB entry:
9KAE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9KAE entry

There are 8 chains in PDB entry 9KAE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 266	ASP 627
B	LYS 266	ASP 627
C	LYS 266	ASP 627
D	LYS 266	ASP 627
E	LYS 266	ASP 627
F	LYS 266	ASP 627
P	A 1	A 10
T	T -8	T 6

There are142 helices in PDB entry 9KAE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	269	281	Right-handed alpha
Helix 2	AA2	A	284	295	Right-handed alpha
Helix 3	AA3	A	302	308	Right-handed alpha
Helix 4	AA4	A	310	315	Right-handed alpha
Helix 5	AA5	A	316	330	Right-handed alpha
Helix 6	AA6	A	332	355	Right-handed alpha
Helix 7	AA7	A	356	376	Right-handed alpha
Helix 8	AA8	A	383	396	Right-handed alpha
Helix 9	AA9	A	400	414	Right-handed alpha
Helix 10	AB1	A	431	444	Right-handed alpha
Helix 11	AB2	A	456	462	Right-handed alpha
Helix 12	AB3	A	463	465	Right-handed 310
Helix 13	AB4	A	480	484	Right-handed 310
Helix 14	AB5	A	489	496	Right-handed alpha
Helix 15	AB6	A	497	503	Right-handed alpha
Helix 16	AB7	A	534	539	Right-handed alpha
Helix 17	AB8	A	550	560	Right-handed alpha
Helix 18	AB9	A	561	566	Right-handed alpha
Helix 19	AC1	A	571	583	Right-handed alpha
Helix 20	AC2	A	584	588	Right-handed 310
Helix 21	AC3	A	589	607	Right-handed alpha
Helix 22	AC4	A	608	622	Right-handed alpha
Helix 23	AC5	B	269	281	Right-handed alpha
Helix 24	AC6	B	284	294	Right-handed alpha
Helix 25	AC7	B	295	297	Right-handed 310
Helix 26	AC8	B	298	301	Right-handed 310
Helix 27	AC9	B	302	308	Right-handed alpha
Helix 28	AD1	B	310	315	Right-handed alpha
Helix 29	AD2	B	316	330	Right-handed alpha
Helix 30	AD3	B	332	355	Right-handed alpha
Helix 31	AD4	B	356	376	Right-handed alpha
Helix 32	AD5	B	383	398	Right-handed alpha
Helix 33	AD6	B	400	415	Right-handed alpha
Helix 34	AD7	B	431	444	Right-handed alpha
Helix 35	AD8	B	456	462	Right-handed alpha
Helix 36	AD9	B	463	465	Right-handed 310
Helix 37	AE1	B	480	484	Right-handed 310
Helix 38	AE2	B	489	497	Right-handed alpha
Helix 39	AE3	B	497	503	Right-handed alpha
Helix 40	AE4	B	534	539	Right-handed alpha
Helix 41	AE5	B	550	559	Right-handed alpha
Helix 42	AE6	B	561	566	Right-handed alpha
Helix 43	AE7	B	571	583	Right-handed alpha
Helix 44	AE8	B	584	588	Right-handed 310
Helix 45	AE9	B	589	607	Right-handed alpha
Helix 46	AF1	B	608	622	Right-handed alpha
Helix 47	AF2	C	269	281	Right-handed alpha
Helix 48	AF3	C	284	294	Right-handed alpha
Helix 49	AF4	C	295	297	Right-handed 310
Helix 50	AF5	C	298	301	Right-handed 310
Helix 51	AF6	C	302	307	Right-handed alpha
Helix 52	AF7	C	310	329	Right-handed alpha
Helix 53	AF8	C	332	355	Right-handed alpha
Helix 54	AF9	C	356	377	Right-handed alpha
Helix 55	AG1	C	383	398	Right-handed alpha
Helix 56	AG2	C	400	415	Right-handed alpha
Helix 57	AG3	C	431	444	Right-handed alpha
Helix 58	AG4	C	456	462	Right-handed alpha
Helix 59	AG5	C	463	465	Right-handed 310
Helix 60	AG6	C	480	484	Right-handed 310
Helix 61	AG7	C	489	497	Right-handed alpha
Helix 62	AG8	C	497	503	Right-handed alpha
Helix 63	AG9	C	534	539	Right-handed alpha
Helix 64	AH1	C	550	560	Right-handed alpha
Helix 65	AH2	C	561	566	Right-handed alpha
Helix 66	AH3	C	571	583	Right-handed alpha
Helix 67	AH4	C	584	588	Right-handed 310
Helix 68	AH5	C	589	607	Right-handed alpha
Helix 69	AH6	C	608	621	Right-handed alpha
Helix 70	AH7	D	269	281	Right-handed alpha
Helix 71	AH8	D	284	294	Right-handed alpha
Helix 72	AH9	D	295	297	Right-handed 310
Helix 73	AI1	D	298	301	Right-handed 310
Helix 74	AI2	D	302	308	Right-handed alpha
Helix 75	AI3	D	310	315	Right-handed alpha
Helix 76	AI4	D	316	330	Right-handed alpha
Helix 77	AI5	D	332	355	Right-handed alpha
Helix 78	AI6	D	356	376	Right-handed alpha
Helix 79	AI7	D	383	398	Right-handed alpha
Helix 80	AI8	D	400	415	Right-handed alpha
Helix 81	AI9	D	431	444	Right-handed alpha
Helix 82	AJ1	D	456	462	Right-handed alpha
Helix 83	AJ2	D	463	465	Right-handed 310
Helix 84	AJ3	D	480	484	Right-handed 310
Helix 85	AJ4	D	489	497	Right-handed alpha
Helix 86	AJ5	D	497	503	Right-handed alpha
Helix 87	AJ6	D	534	539	Right-handed alpha
Helix 88	AJ7	D	550	560	Right-handed alpha
Helix 89	AJ8	D	561	566	Right-handed alpha
Helix 90	AJ9	D	571	583	Right-handed alpha
Helix 91	AK1	D	584	588	Right-handed 310
Helix 92	AK2	D	589	591	Right-handed 310
Helix 93	AK3	D	592	607	Right-handed alpha
Helix 94	AK4	D	608	621	Right-handed alpha
Helix 95	AK5	E	269	281	Right-handed alpha
Helix 96	AK6	E	284	294	Right-handed alpha
Helix 97	AK7	E	295	297	Right-handed 310
Helix 98	AK8	E	302	308	Right-handed alpha
Helix 99	AK9	E	310	315	Right-handed alpha
Helix 100	AL1	E	316	330	Right-handed alpha
Helix 101	AL2	E	332	355	Right-handed alpha
Helix 102	AL3	E	356	376	Right-handed alpha
Helix 103	AL4	E	383	398	Right-handed alpha
Helix 104	AL5	E	400	415	Right-handed alpha
Helix 105	AL6	E	431	444	Right-handed alpha
Helix 106	AL7	E	456	462	Right-handed alpha
Helix 107	AL8	E	463	465	Right-handed 310
Helix 108	AL9	E	478	484	Right-handed 310
Helix 109	AM1	E	489	497	Right-handed alpha
Helix 110	AM2	E	497	503	Right-handed alpha
Helix 111	AM3	E	534	539	Right-handed alpha
Helix 112	AM4	E	550	558	Right-handed alpha
Helix 113	AM5	E	561	566	Right-handed alpha
Helix 114	AM6	E	571	583	Right-handed alpha
Helix 115	AM7	E	584	588	Right-handed 310
Helix 116	AM8	E	592	607	Right-handed alpha
Helix 117	AM9	E	608	621	Right-handed alpha
Helix 118	AN1	F	269	280	Right-handed alpha
Helix 119	AN2	F	284	294	Right-handed alpha
Helix 120	AN3	F	295	297	Right-handed 310
Helix 121	AN4	F	298	301	Right-handed 310
Helix 122	AN5	F	302	308	Right-handed alpha
Helix 123	AN6	F	310	315	Right-handed alpha
Helix 124	AN7	F	316	328	Right-handed alpha
Helix 125	AN8	F	332	355	Right-handed alpha
Helix 126	AN9	F	356	376	Right-handed alpha
Helix 127	AO1	F	383	397	Right-handed alpha
Helix 128	AO2	F	400	415	Right-handed alpha
Helix 129	AO3	F	431	444	Right-handed alpha
Helix 130	AO4	F	453	455	Right-handed 310
Helix 131	AO5	F	456	462	Right-handed alpha
Helix 132	AO6	F	463	465	Right-handed 310
Helix 133	AO7	F	479	484	Right-handed 310
Helix 134	AO8	F	489	497	Right-handed alpha
Helix 135	AO9	F	497	502	Right-handed alpha
Helix 136	AP1	F	534	539	Right-handed alpha
Helix 137	AP2	F	550	559	Right-handed alpha
Helix 138	AP3	F	561	566	Right-handed alpha
Helix 139	AP4	F	571	583	Right-handed alpha
Helix 140	AP5	F	584	588	Right-handed 310
Helix 141	AP6	F	589	605	Right-handed alpha
Helix 142	AP7	F	608	621	Right-handed alpha

There are 12 sheets in PDB entry 9KAE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	445	448	first strand
Strand 2	A	469	475	parallel
Strand 3	A	524	528	parallel
Strand 4	A	421	425	parallel
Strand 5	A	541	546	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	507	509	first strand
Strand 2	A	517	519	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	445	448	first strand
Strand 2	B	469	475	parallel
Strand 3	B	524	528	parallel
Strand 4	B	421	425	parallel
Strand 5	B	541	546	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	507	509	first strand
Strand 2	B	517	519	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	445	448	first strand
Strand 2	C	469	475	parallel
Strand 3	C	524	528	parallel
Strand 4	C	421	425	parallel
Strand 5	C	541	546	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	507	509	first strand
Strand 2	C	517	519	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	445	448	first strand
Strand 2	D	469	475	parallel
Strand 3	D	524	528	parallel
Strand 4	D	421	425	parallel
Strand 5	D	541	546	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	507	509	first strand
Strand 2	D	517	519	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	445	448	first strand
Strand 2	E	469	475	parallel
Strand 3	E	524	528	parallel
Strand 4	E	421	425	parallel
Strand 5	E	541	546	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	507	509	first strand
Strand 2	E	517	519	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	446	448	first strand
Strand 2	F	470	472	parallel
Strand 3	F	524	528	parallel
Strand 4	F	421	425	parallel
Strand 5	F	541	546	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	507	509	first strand
Strand 2	F	517	519	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9KAE

Analysis of interatomic Contacts of Structural Units in PDB entry:
9KAE