Analysis of interatomic Contacts of Structural Units in PDB entry:
9KBC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9KBC entry

There is 1 chain in PDB entry 9KBC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 6SER 291
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 9KBC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 28Right-handed alpha
Helix 2
AA2
A
42 49Right-handed alpha
Helix 3
AA3
A
55 62Right-handed alpha
Helix 4
AA4
A
72 84Right-handed alpha
Helix 5
AA5
A
85 87Right-handed 310
Helix 6
AA6
A
99 113Right-handed alpha
Helix 7
AA7
A
125 129Right-handed 310
Helix 8
AA8
A
141 153Right-handed alpha
Helix 9
AA9
A
166 196Right-handed alpha
Helix 10
AB1
A
199 216Right-handed alpha
Helix 11
AB2
A
217 228Right-handed alpha
Helix 12
AB3
A
236 254Right-handed alpha
Helix 13
AB4
A
261 274Right-handed alpha
Helix 14
AB5
A
280 282Right-handed 310
Helix 15
AB6
A
283 288Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 9KBC.

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 52first strand
Strand 2
A
32 35parallel
Strand 3
A
9 12parallel
Strand 4
A
65 68parallel
Strand 5
A
91 94parallel
Strand 6
A
116 122parallel
Strand 7
A
135 139anti-parallel
Strand 8
A
157 160parallel
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