Analysis of interatomic Contacts of Structural Units in PDB entry:
9KBD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9KBD entry

There are 4 chains in PDB entry 9KBD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 PRO 2GLU 161
C
 PRO 10GLU 414
R
 ARG 21ASP 36
A
 GLN 14TYR 774
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 57 helices in PDB entry 9KBD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
18 22Right-handed alpha
Helix 2
AA2
B
24 34Right-handed alpha
Helix 3
AA3
B
51 65Right-handed alpha
Helix 4
AA4
B
81 85Right-handed 310
Helix 5
AA5
B
86 93Right-handed alpha
Helix 6
AA6
B
96 110Right-handed alpha
Helix 7
AA7
B
112 126Right-handed alpha
Helix 8
AA8
B
131 140Right-handed alpha
Helix 9
AA9
B
146 158Right-handed alpha
Helix 10
AB1
B
159 161Right-handed 310
Helix 11
AB2
C
17 27Right-handed alpha
Helix 12
AB3
C
29 36Right-handed alpha
Helix 13
AB4
C
37 39Right-handed 310
Helix 14
AB5
C
40 48Right-handed alpha
Helix 15
AB6
C
50 54Right-handed 310
Helix 16
AB7
C
64 72Right-handed alpha
Helix 17
AB8
C
74 87Right-handed alpha
Helix 18
AB9
C
89 111Right-handed alpha
Helix 19
AC1
C
111 118Right-handed alpha
Helix 20
AC2
C
123 135Right-handed alpha
Helix 21
AC3
C
139 147Right-handed alpha
Helix 22
AC4
C
176 183Right-handed alpha
Helix 23
AC5
C
244 259Right-handed alpha
Helix 24
AC6
C
294 297Right-handed 310
Helix 25
AC7
C
409 414Right-handed alpha
Helix 26
AC8
A
20 33Right-handed alpha
Helix 27
AC9
A
38 54Right-handed alpha
Helix 28
AD1
A
85 105Right-handed alpha
Helix 29
AD2
A
112 137Right-handed alpha
Helix 30
AD3
A
139 144Right-handed alpha
Helix 31
AD4
A
144 151Right-handed alpha
Helix 32
AD5
A
158 171Right-handed alpha
Helix 33
AD6
A
175 192Right-handed alpha
Helix 34
AD7
A
197 211Right-handed alpha
Helix 35
AD8
A
227 232Right-handed alpha
Helix 36
AD9
A
232 252Right-handed alpha
Helix 37
AE1
A
256 274Right-handed alpha
Helix 38
AE2
A
282 296Right-handed alpha
Helix 39
AE3
A
299 314Right-handed alpha
Helix 40
AE4
A
315 327Right-handed alpha
Helix 41
AE5
A
333 356Right-handed alpha
Helix 42
AE6
A
357 362Right-handed alpha
Helix 43
AE7
A
362 383Right-handed alpha
Helix 44
AE8
A
388 404Right-handed alpha
Helix 45
AE9
A
406 412Right-handed alpha
Helix 46
AF1
A
416 431Right-handed alpha
Helix 47
AF2
A
438 454Right-handed alpha
Helix 48
AF3
A
458 475Right-handed alpha
Helix 49
AF4
A
481 496Right-handed alpha
Helix 50
AF5
A
501 528Right-handed alpha
Helix 51
AF6
A
556 574Right-handed alpha
Helix 52
AF7
A
605 617Right-handed alpha
Helix 53
AF8
A
622 630Right-handed alpha
Helix 54
AF9
A
632 646Right-handed alpha
Helix 55
AG1
A
688 723Right-handed alpha
Helix 56
AG2
A
727 739Right-handed alpha
Helix 57
AG3
A
745 758Right-handed alpha
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There are 14 sheets in PDB entry 9KBD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
14 17first strand
Strand 2
B
3 7anti-parallel
Strand 3
B
45 46parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
162 163first strand
Strand 2
C
170 171anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
173 174first strand
Strand 2
C
197 198anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
193 195first strand
Strand 2
C
207 209anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
221 222first strand
Strand 2
C
240 242anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
263 264first strand
Strand 2
C
267 268anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
284 285first strand
Strand 2
C
309 314anti-parallel
Strand 3
C
360 364anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
291 292first strand
Strand 2
C
306 307anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
340 341first strand
Strand 2
C
332 335anti-parallel
Strand 3
C
374 384anti-parallel
Strand 4
C
324 329anti-parallel
Strand 5
C
354 355anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
340 341first strand
Strand 2
C
332 335anti-parallel
Strand 3
C
374 384anti-parallel
Strand 4
C
391 396anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
534 541first strand
Strand 2
R
23 34parallel
Strand 3
A
578 579anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
534 541first strand
Strand 2
R
23 34parallel
Strand 3
A
587 591anti-parallel
Strand 4
A
600 604anti-parallel
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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
620 621first strand
Strand 2
A
668 670anti-parallel
Strand 3
A
650 651anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
725 726first strand
Strand 2
A
771 772anti-parallel
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