Analysis of interatomic Contacts of Structural Units in PDB entry:
9KBF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9KBF entry

There are 2 chains in PDB entry 9KBF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 MET 1GLU 162
C
 PRO 10GLY 416
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 9KBF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
18 22Right-handed alpha
Helix 2
AA2
B
24 34Right-handed alpha
Helix 3
AA3
B
34 39Right-handed alpha
Helix 4
AA4
B
51 65Right-handed alpha
Helix 5
AA5
B
75 79Right-handed 310
Helix 6
AA6
B
86 93Right-handed alpha
Helix 7
AA7
B
96 111Right-handed alpha
Helix 8
AA8
B
112 126Right-handed alpha
Helix 9
AA9
B
131 139Right-handed alpha
Helix 10
AB1
B
146 158Right-handed alpha
Helix 11
AB2
C
17 27Right-handed alpha
Helix 12
AB3
C
29 38Right-handed alpha
Helix 13
AB4
C
40 48Right-handed alpha
Helix 14
AB5
C
51 56Right-handed alpha
Helix 15
AB6
C
64 72Right-handed alpha
Helix 16
AB7
C
74 87Right-handed alpha
Helix 17
AB8
C
89 107Right-handed alpha
Helix 18
AB9
C
111 118Right-handed alpha
Helix 19
AC1
C
123 135Right-handed alpha
Helix 20
AC2
C
139 149Right-handed alpha
Helix 21
AC3
C
176 183Right-handed alpha
Helix 22
AC4
C
244 258Right-handed alpha
Helix 23
AC5
C
347 351Right-handed 310
Helix 24
AC6
C
409 415Right-handed alpha
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There are 10 sheets in PDB entry 9KBF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
13 17first strand
Strand 2
B
3 7anti-parallel
Strand 3
B
45 46parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
162 164first strand
Strand 2
C
169 171anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
173 174first strand
Strand 2
C
197 198anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
185 186first strand
Strand 2
C
191 195anti-parallel
Strand 3
C
207 209anti-parallel
Strand 4
C
221 222anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
224 226first strand
Strand 2
C
236 239anti-parallel
Strand 3
C
406 407anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
263 264first strand
Strand 2
C
267 268anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
284 285first strand
Strand 2
C
306 314anti-parallel
Strand 3
C
288 292anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
284 285first strand
Strand 2
C
306 314anti-parallel
Strand 3
C
360 367anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
354 355first strand
Strand 2
C
324 325anti-parallel
Strand 3
C
382 384anti-parallel
Strand 4
C
391 392anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
340 343first strand
Strand 2
C
330 334anti-parallel
Strand 3
C
378 379anti-parallel
Strand 4
C
395 396anti-parallel
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