Analysis of interatomic Contacts of Structural Units in PDB entry:
9KBH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9KBH entry

There are 7 chains in PDB entry 9KBH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 202	LEU 498
B	VAL 202	GLN 499
C	VAL 202	GLN 499
D	VAL 202	GLN 499
E	VAL 202	GLN 499
F	VAL 202	PHE 486
H	A 1	T 6

There are 78 helices in PDB entry 9KBH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	210	226	Right-handed alpha
Helix 2	AA2	A	230	238	Right-handed alpha
Helix 3	AA3	A	238	246	Right-handed alpha
Helix 4	AA4	A	248	270	Right-handed alpha
Helix 5	AA5	A	271	278	Right-handed alpha
Helix 6	AA6	A	290	299	Right-handed alpha
Helix 7	AA7	A	302	315	Right-handed alpha
Helix 8	AA8	A	334	343	Right-handed alpha
Helix 9	AA9	A	377	382	Right-handed alpha
Helix 10	AB1	A	382	390	Right-handed alpha
Helix 11	AB2	A	431	437	Right-handed alpha
Helix 12	AB3	A	456	467	Right-handed alpha
Helix 13	AB4	A	472	479	Right-handed alpha
Helix 14	AB5	B	210	227	Right-handed alpha
Helix 15	AB6	B	230	238	Right-handed alpha
Helix 16	AB7	B	238	246	Right-handed alpha
Helix 17	AB8	B	248	268	Right-handed alpha
Helix 18	AB9	B	271	278	Right-handed alpha
Helix 19	AC1	B	286	289	Right-handed 310
Helix 20	AC2	B	290	299	Right-handed alpha
Helix 21	AC3	B	302	314	Right-handed alpha
Helix 22	AC4	B	334	343	Right-handed alpha
Helix 23	AC5	B	380	390	Right-handed alpha
Helix 24	AC6	B	432	437	Right-handed alpha
Helix 25	AC7	B	457	470	Right-handed alpha
Helix 26	AC8	B	475	480	Right-handed alpha
Helix 27	AC9	C	210	226	Right-handed alpha
Helix 28	AD1	C	230	238	Right-handed alpha
Helix 29	AD2	C	238	246	Right-handed alpha
Helix 30	AD3	C	248	268	Right-handed alpha
Helix 31	AD4	C	272	277	Right-handed alpha
Helix 32	AD5	C	290	299	Right-handed alpha
Helix 33	AD6	C	302	315	Right-handed alpha
Helix 34	AD7	C	333	341	Right-handed alpha
Helix 35	AD8	C	380	390	Right-handed alpha
Helix 36	AD9	C	432	438	Right-handed alpha
Helix 37	AE1	C	456	470	Right-handed alpha
Helix 38	AE2	C	472	480	Right-handed alpha
Helix 39	AE3	D	210	226	Right-handed alpha
Helix 40	AE4	D	230	238	Right-handed alpha
Helix 41	AE5	D	238	246	Right-handed alpha
Helix 42	AE6	D	248	268	Right-handed alpha
Helix 43	AE7	D	272	277	Right-handed alpha
Helix 44	AE8	D	290	299	Right-handed alpha
Helix 45	AE9	D	302	314	Right-handed alpha
Helix 46	AF1	D	333	343	Right-handed alpha
Helix 47	AF2	D	380	390	Right-handed alpha
Helix 48	AF3	D	431	437	Right-handed 310
Helix 49	AF4	D	449	453	Right-handed 310
Helix 50	AF5	D	456	469	Right-handed alpha
Helix 51	AF6	D	472	480	Right-handed alpha
Helix 52	AF7	D	495	499	Right-handed 310
Helix 53	AF8	E	210	226	Right-handed alpha
Helix 54	AF9	E	230	238	Right-handed alpha
Helix 55	AG1	E	238	246	Right-handed alpha
Helix 56	AG2	E	248	268	Right-handed alpha
Helix 57	AG3	E	271	276	Right-handed alpha
Helix 58	AG4	E	290	299	Right-handed alpha
Helix 59	AG5	E	302	315	Right-handed alpha
Helix 60	AG6	E	333	343	Right-handed alpha
Helix 61	AG7	E	380	388	Right-handed alpha
Helix 62	AG8	E	431	438	Right-handed alpha
Helix 63	AG9	E	456	469	Right-handed alpha
Helix 64	AH1	E	473	478	Right-handed alpha
Helix 65	AH2	E	490	494	Right-handed 310
Helix 66	AH3	E	495	499	Right-handed 310
Helix 67	AH4	F	210	226	Right-handed alpha
Helix 68	AH5	F	230	238	Right-handed alpha
Helix 69	AH6	F	238	246	Right-handed alpha
Helix 70	AH7	F	248	268	Right-handed alpha
Helix 71	AH8	F	271	276	Right-handed 310
Helix 72	AH9	F	290	299	Right-handed alpha
Helix 73	AI1	F	302	314	Right-handed alpha
Helix 74	AI2	F	333	343	Right-handed alpha
Helix 75	AI3	F	380	388	Right-handed alpha
Helix 76	AI4	F	429	437	Right-handed alpha
Helix 77	AI5	F	456	469	Right-handed alpha
Helix 78	AI6	F	472	479	Right-handed alpha

There are 13 sheets in PDB entry 9KBH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	349	350	first strand
Strand 2	A	369	372	parallel
Strand 3	A	410	414	parallel
Strand 4	A	324	327	parallel
Strand 5	A	440	441	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	348	350	first strand
Strand 2	B	368	372	parallel
Strand 3	B	410	414	parallel
Strand 4	B	323	327	parallel
Strand 5	B	440	443	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	393	396	first strand
Strand 2	B	402	405	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	421	423	first strand
Strand 2	B	426	428	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	349	350	first strand
Strand 2	C	369	372	parallel
Strand 3	C	410	414	parallel
Strand 4	C	323	327	parallel
Strand 5	C	440	443	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	393	395	first strand
Strand 2	C	403	405	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	421	423	first strand
Strand 2	C	426	428	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	349	350	first strand
Strand 2	D	369	372	parallel
Strand 3	D	410	414	parallel
Strand 4	D	323	327	parallel
Strand 5	D	439	443	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	421	423	first strand
Strand 2	D	426	428	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	325	327	first strand
Strand 2	E	412	414	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	422	423	first strand
Strand 2	E	426	427	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	348	350	first strand
Strand 2	F	368	371	parallel
Strand 3	F	410	413	parallel
Strand 4	F	324	327	parallel
Strand 5	F	442	443	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	422	423	first strand
Strand 2	F	426	427	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9KBH

Analysis of interatomic Contacts of Structural Units in PDB entry:
9KBH