Analysis of interatomic Contacts of Structural Units in PDB entry:
9KBW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9KBW entry

There are 3 chains in PDB entry 9KBW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 202LEU 273
B
 MET 1GLN 436
C
 MET 1SER 439
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 9KBW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
203 213Right-handed alpha
Helix 2
AA2
A
260 268Right-handed alpha
Helix 3
AA3
A
268 273Right-handed alpha
Helix 4
AA4
B
10 29Right-handed alpha
Helix 5
AA5
B
40 49Right-handed alpha
Helix 6
AA6
B
72 81Right-handed alpha
Helix 7
AA7
B
83 87Right-handed 310
Helix 8
AA8
B
102 108Right-handed alpha
Helix 9
AA9
B
114 127Right-handed alpha
Helix 10
AB1
B
143 148Right-handed alpha
Helix 11
AB2
B
148 161Right-handed alpha
Helix 12
AB3
B
182 198Right-handed alpha
Helix 13
AB4
B
205 216Right-handed alpha
Helix 14
AB5
B
223 239Right-handed alpha
Helix 15
AB6
B
240 244Right-handed 310
Helix 16
AB7
B
251 260Right-handed alpha
Helix 17
AB8
B
279 284Right-handed 310
Helix 18
AB9
B
287 297Right-handed alpha
Helix 19
AC1
B
306 310Right-handed 310
Helix 20
AC2
B
324 339Right-handed alpha
Helix 21
AC3
B
340 343Right-handed 310
Helix 22
AC4
B
384 400Right-handed alpha
Helix 23
AC5
B
404 410Right-handed alpha
Helix 24
AC6
B
414 434Right-handed alpha
Helix 25
AC7
C
10 29Right-handed alpha
Helix 26
AC8
C
48 51Right-handed 310
Helix 27
AC9
C
71 81Right-handed alpha
Helix 28
AD1
C
88 90Right-handed 310
Helix 29
AD2
C
102 108Right-handed alpha
Helix 30
AD3
C
110 113Right-handed 310
Helix 31
AD4
C
114 129Right-handed alpha
Helix 32
AD5
C
143 161Right-handed alpha
Helix 33
AD6
C
182 190Right-handed alpha
Helix 34
AD7
C
190 197Right-handed alpha
Helix 35
AD8
C
206 216Right-handed alpha
Helix 36
AD9
C
223 239Right-handed alpha
Helix 37
AE1
C
251 260Right-handed alpha
Helix 38
AE2
C
279 283Right-handed 310
Helix 39
AE3
C
287 296Right-handed alpha
Helix 40
AE4
C
297 301Right-handed 310
Helix 41
AE5
C
306 310Right-handed 310
Helix 42
AE6
C
324 338Right-handed alpha
Helix 43
AE7
C
384 400Right-handed alpha
Helix 44
AE8
C
404 410Right-handed alpha
Helix 45
AE9
C
415 435Right-handed alpha
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There are 7 sheets in PDB entry 9KBW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
226 228first strand
Strand 2
A
231 233anti-parallel
Strand 3
A
238 243anti-parallel
Strand 4
A
249 253anti-parallel
Strand 5
A
256 259anti-parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 94first strand
Strand 2
B
65 69parallel
Strand 3
B
4 9parallel
Strand 4
B
134 140parallel
Strand 5
B
165 171parallel
Strand 6
B
200 202parallel
Strand 7
B
267 272parallel
Strand 8
B
373 381anti-parallel
Strand 9
B
312 321anti-parallel
Strand 10
B
351 356parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 56first strand
Strand 2
B
60 63anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
92 94first strand
Strand 2
C
65 69parallel
Strand 3
C
3 9parallel
Strand 4
C
132 140parallel
Strand 5
C
165 172parallel
Strand 6
C
200 201parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
92 94first strand
Strand 2
C
65 69parallel
Strand 3
C
3 9parallel
Strand 4
C
132 140parallel
Strand 5
C
165 172parallel
Strand 6
C
204 205parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
53 55first strand
Strand 2
C
61 63anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
269 272first strand
Strand 2
C
373 381anti-parallel
Strand 3
C
312 321anti-parallel
Strand 4
C
351 356parallel
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