Analysis of interatomic Contacts of Structural Units in PDB entry:
9KCJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9KCJ entry

There are 3 chains in PDB entry 9KCJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 39TYR 1023
B
 TRP 16ALA 279
C
 GLU 131GLY 164
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 9KCJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
47 56Right-handed alpha
Helix 2
AA2
A
64 76Right-handed alpha
Helix 3
AA3
A
87 97Right-handed alpha
Helix 4
AA4
A
100 122Right-handed alpha
Helix 5
AA5
A
127 163Right-handed alpha
Helix 6
AA6
A
183 185Right-handed 310
Helix 7
AA7
A
261 264Right-handed 310
Helix 8
AA8
A
265 270Right-handed alpha
Helix 9
AA9
A
282 313Right-handed alpha
Helix 10
AB1
A
316 331Right-handed alpha
Helix 11
AB2
A
335 354Right-handed alpha
Helix 12
AB3
A
360 362Right-handed 310
Helix 13
AB4
A
363 369Right-handed alpha
Helix 14
AB5
A
415 429Right-handed alpha
Helix 15
AB6
A
450 464Right-handed alpha
Helix 16
AB7
A
466 474Right-handed alpha
Helix 17
AB8
A
510 516Right-handed alpha
Helix 18
AB9
A
531 548Right-handed alpha
Helix 19
AC1
A
598 609Right-handed alpha
Helix 20
AC2
A
620 632Right-handed alpha
Helix 21
AC3
A
640 648Right-handed alpha
Helix 22
AC4
A
656 660Right-handed 310
Helix 23
AC5
A
667 672Right-handed alpha
Helix 24
AC6
A
674 685Right-handed alpha
Helix 25
AC7
A
694 708Right-handed alpha
Helix 26
AC8
A
718 720Right-handed 310
Helix 27
AC9
A
721 728Right-handed alpha
Helix 28
AD1
A
741 746Right-handed alpha
Helix 29
AD2
A
754 756Right-handed 310
Helix 30
AD3
A
757 781Right-handed alpha
Helix 31
AD4
A
782 797Right-handed alpha
Helix 32
AD5
A
803 815Right-handed alpha
Helix 33
AD6
A
816 821Right-handed alpha
Helix 34
AD7
A
822 825Right-handed 310
Helix 35
AD8
A
830 834Right-handed 310
Helix 36
AD9
A
846 856Right-handed alpha
Helix 37
AE1
A
856 877Right-handed alpha
Helix 38
AE2
A
879 884Right-handed 310
Helix 39
AE3
A
886 891Right-handed alpha
Helix 40
AE4
A
907 938Right-handed alpha
Helix 41
AE5
A
943 948Right-handed alpha
Helix 42
AE6
A
951 971Right-handed alpha
Helix 43
AE7
A
973 978Right-handed alpha
Helix 44
AE8
A
984 990Right-handed 310
Helix 45
AE9
A
991 1012Right-handed alpha
Helix 46
AF1
A
1015 1021Right-handed alpha
Helix 47
AF2
B
34 65Right-handed alpha
Helix 48
AF3
B
103 114Right-handed alpha
Helix 49
AF4
B
147 151Right-handed 310
Helix 50
AF5
B
211 215Right-handed 310
Helix 51
AF6
C
138 162Right-handed alpha
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There are 8 sheets in PDB entry 9KCJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
176 181first strand
Strand 2
A
168 173anti-parallel
Strand 3
A
190 193anti-parallel
Strand 4
A
248 258anti-parallel
Strand 5
A
203 214anti-parallel
Strand 6
A
225 226anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
197 198first strand
Strand 2
A
248 258anti-parallel
Strand 3
A
203 214anti-parallel
Strand 4
A
242 243anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
356 358first strand
Strand 2
A
748 750anti-parallel
Strand 3
A
730 734parallel
Strand 4
A
712 715parallel
Strand 5
A
372 375parallel
Strand 6
A
612 616parallel
Strand 7
A
687 691parallel
Strand 8
A
662 666parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
396 399first strand
Strand 2
A
387 393anti-parallel
Strand 3
A
583 592anti-parallel
Strand 4
A
550 559anti-parallel
Strand 5
A
504 509anti-parallel
Strand 6
A
488 493anti-parallel
Strand 7
A
476 480anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
396 399first strand
Strand 2
A
387 393anti-parallel
Strand 3
A
583 592anti-parallel
Strand 4
A
518 523parallel
Strand 5
A
526 529anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
898 899first strand
Strand 2
A
905 906anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
81 84first strand
Strand 2
B
170 175anti-parallel
Strand 3
B
231 236anti-parallel
Strand 4
B
200 201anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 94first strand
Strand 2
B
270 276parallel
Strand 3
B
245 252anti-parallel
Strand 4
B
189 193anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il