Analysis of interatomic Contacts of Structural Units in PDB entry:
9KCM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9KCM entry

There are 4 chains in PDB entry 9KCM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	LEU 40	ALA 279
N	CYS 30	SER 327
A	MET 41	TYR 1023
T	PRO 135	ASN 273

There are 61 helices in PDB entry 9KCM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	41	63	Right-handed alpha
Helix 2	AA2	B	99	114	Right-handed alpha
Helix 3	AA3	B	118	122	Right-handed 310
Helix 4	AA4	B	147	151	Right-handed 310
Helix 5	AA5	N	66	71	Right-handed alpha
Helix 6	AA6	N	78	83	Right-handed 310
Helix 7	AA7	N	112	117	Right-handed alpha
Helix 8	AA8	N	119	127	Right-handed alpha
Helix 9	AA9	N	138	151	Right-handed alpha
Helix 10	AB1	N	170	183	Right-handed alpha
Helix 11	AB2	N	184	194	Right-handed alpha
Helix 12	AB3	N	202	217	Right-handed alpha
Helix 13	AB4	N	218	231	Right-handed alpha
Helix 14	AB5	N	243	247	Right-handed 310
Helix 15	AB6	N	266	275	Right-handed alpha
Helix 16	AB7	N	293	298	Right-handed alpha
Helix 17	AB8	N	298	312	Right-handed alpha
Helix 18	AB9	A	47	56	Right-handed alpha
Helix 19	AC1	A	64	76	Right-handed alpha
Helix 20	AC2	A	88	96	Right-handed alpha
Helix 21	AC3	A	100	122	Right-handed alpha
Helix 22	AC4	A	128	161	Right-handed alpha
Helix 23	AC5	A	162	164	Right-handed 310
Helix 24	AC6	A	183	185	Right-handed 310
Helix 25	AC7	A	282	313	Right-handed alpha
Helix 26	AC8	A	316	332	Right-handed alpha
Helix 27	AC9	A	335	351	Right-handed alpha
Helix 28	AD1	A	361	367	Right-handed alpha
Helix 29	AD2	A	404	408	Right-handed 310
Helix 30	AD3	A	415	429	Right-handed alpha
Helix 31	AD4	A	450	464	Right-handed alpha
Helix 32	AD5	A	466	474	Right-handed alpha
Helix 33	AD6	A	510	516	Right-handed alpha
Helix 34	AD7	A	531	547	Right-handed alpha
Helix 35	AD8	A	598	609	Right-handed alpha
Helix 36	AD9	A	622	631	Right-handed alpha
Helix 37	AE1	A	640	648	Right-handed alpha
Helix 38	AE2	A	651	655	Right-handed 310
Helix 39	AE3	A	656	660	Right-handed 310
Helix 40	AE4	A	667	671	Right-handed alpha
Helix 41	AE5	A	674	683	Right-handed alpha
Helix 42	AE6	A	694	696	Right-handed 310
Helix 43	AE7	A	697	707	Right-handed alpha
Helix 44	AE8	A	721	728	Right-handed alpha
Helix 45	AE9	A	741	746	Right-handed alpha
Helix 46	AF1	A	754	767	Right-handed alpha
Helix 47	AF2	A	768	777	Right-handed alpha
Helix 48	AF3	A	782	797	Right-handed alpha
Helix 49	AF4	A	803	814	Right-handed alpha
Helix 50	AF5	A	816	824	Right-handed alpha
Helix 51	AF6	A	846	856	Right-handed alpha
Helix 52	AF7	A	858	876	Right-handed alpha
Helix 53	AF8	A	886	891	Right-handed alpha
Helix 54	AF9	A	907	941	Right-handed alpha
Helix 55	AG1	A	991	1010	Right-handed alpha
Helix 56	AG2	T	144	152	Right-handed alpha
Helix 57	AG3	T	167	182	Right-handed alpha
Helix 58	AG4	T	201	206	Right-handed alpha
Helix 59	AG5	T	224	227	Right-handed 310
Helix 60	AG6	T	247	256	Right-handed alpha
Helix 61	AG7	T	256	272	Right-handed alpha

There are 13 sheets in PDB entry 9KCM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	81	84	first strand
Strand 2	B	170	175	anti-parallel
Strand 3	B	231	235	anti-parallel
Strand 4	B	201	203	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	92	95	first strand
Strand 2	B	270	277	parallel
Strand 3	B	245	253	anti-parallel
Strand 4	B	188	189	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	31	36	first strand
Strand 2	N	41	47	anti-parallel
Strand 3	N	89	93	anti-parallel
Strand 4	N	56	60	parallel
Strand 5	N	132	137	parallel
Strand 6	N	155	161	parallel
Strand 7	N	255	261	parallel
Strand 8	N	282	287	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	168	169	first strand
Strand 2	A	180	181	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	172	173	first strand
Strand 2	A	176	177	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	190	193	first strand
Strand 2	A	248	260	anti-parallel
Strand 3	A	202	214	anti-parallel
Strand 4	A	225	227	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	197	198	first strand
Strand 2	A	248	260	anti-parallel
Strand 3	A	202	214	anti-parallel
Strand 4	A	242	243	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	357	358	first strand
Strand 2	A	748	750	anti-parallel
Strand 3	A	730	734	parallel
Strand 4	A	712	716	parallel
Strand 5	A	372	376	parallel
Strand 6	A	612	616	parallel
Strand 7	A	687	691	parallel
Strand 8	A	662	666	parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	398	399	first strand
Strand 2	A	387	392	anti-parallel
Strand 3	A	583	592	anti-parallel
Strand 4	A	550	557	anti-parallel
Strand 5	A	504	509	anti-parallel
Strand 6	A	488	493	anti-parallel
Strand 7	A	476	480	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	398	399	first strand
Strand 2	A	387	392	anti-parallel
Strand 3	A	583	592	anti-parallel
Strand 4	A	518	521	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	432	433	first strand
Strand 2	A	447	448	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	898	899	first strand
Strand 2	A	905	906	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	138	141	first strand
Strand 2	T	189	195	parallel
Strand 3	T	157	163	parallel
Strand 4	T	219	222	anti-parallel
Strand 5	T	230	232	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9KCM

Analysis of interatomic Contacts of Structural Units in PDB entry:
9KCM