Analysis of interatomic Contacts of Structural Units in PDB entry:
9KCU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9KCU entry

There are 4 chains in PDB entry 9KCU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 58SER 385
B
 ARG 58SER 385
C
 ARG 58SER 385
D
 ARG 58SER 385
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 72 helices in PDB entry 9KCU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
65 85Right-handed alpha
Helix 2
AA2
A
86 90Right-handed 310
Helix 3
AA3
A
103 129Right-handed alpha
Helix 4
AA4
A
135 139Right-handed 310
Helix 5
AA5
A
149 160Right-handed alpha
Helix 6
AA6
A
161 168Right-handed alpha
Helix 7
AA7
A
171 180Right-handed alpha
Helix 8
AA8
A
182 186Right-handed 310
Helix 9
AA9
A
195 197Right-handed 310
Helix 10
AB1
A
198 222Right-handed alpha
Helix 11
AB2
A
232 270Right-handed alpha
Helix 12
AB3
A
280 284Right-handed 310
Helix 13
AB4
A
286 295Right-handed alpha
Helix 14
AB5
A
297 302Right-handed alpha
Helix 15
AB6
A
311 313Right-handed 310
Helix 16
AB7
A
314 320Right-handed alpha
Helix 17
AB8
A
326 344Right-handed alpha
Helix 18
AB9
A
354 385Right-handed alpha
Helix 19
AC1
B
65 85Right-handed alpha
Helix 20
AC2
B
86 90Right-handed 310
Helix 21
AC3
B
103 130Right-handed alpha
Helix 22
AC4
B
135 139Right-handed 310
Helix 23
AC5
B
149 160Right-handed alpha
Helix 24
AC6
B
161 170Right-handed alpha
Helix 25
AC7
B
171 180Right-handed alpha
Helix 26
AC8
B
182 186Right-handed 310
Helix 27
AC9
B
192 197Right-handed alpha
Helix 28
AD1
B
199 222Right-handed alpha
Helix 29
AD2
B
232 270Right-handed alpha
Helix 30
AD3
B
280 284Right-handed 310
Helix 31
AD4
B
286 294Right-handed alpha
Helix 32
AD5
B
297 302Right-handed alpha
Helix 33
AD6
B
311 314Right-handed 310
Helix 34
AD7
B
315 320Right-handed alpha
Helix 35
AD8
B
326 344Right-handed alpha
Helix 36
AD9
B
354 385Right-handed alpha
Helix 37
AE1
C
65 85Right-handed alpha
Helix 38
AE2
C
86 90Right-handed 310
Helix 39
AE3
C
103 129Right-handed alpha
Helix 40
AE4
C
135 139Right-handed 310
Helix 41
AE5
C
149 160Right-handed alpha
Helix 42
AE6
C
161 169Right-handed alpha
Helix 43
AE7
C
171 180Right-handed alpha
Helix 44
AE8
C
195 197Right-handed 310
Helix 45
AE9
C
198 222Right-handed alpha
Helix 46
AF1
C
229 270Right-handed alpha
Helix 47
AF2
C
280 284Right-handed 310
Helix 48
AF3
C
286 294Right-handed alpha
Helix 49
AF4
C
297 302Right-handed alpha
Helix 50
AF5
C
311 314Right-handed 310
Helix 51
AF6
C
315 320Right-handed alpha
Helix 52
AF7
C
321 325Right-handed 310
Helix 53
AF8
C
326 344Right-handed alpha
Helix 54
AF9
C
354 385Right-handed alpha
Helix 55
AG1
D
65 85Right-handed alpha
Helix 56
AG2
D
86 90Right-handed 310
Helix 57
AG3
D
103 130Right-handed alpha
Helix 58
AG4
D
135 139Right-handed 310
Helix 59
AG5
D
149 160Right-handed alpha
Helix 60
AG6
D
161 169Right-handed alpha
Helix 61
AG7
D
171 179Right-handed alpha
Helix 62
AG8
D
182 186Right-handed 310
Helix 63
AG9
D
192 197Right-handed alpha
Helix 64
AH1
D
198 222Right-handed alpha
Helix 65
AH2
D
233 270Right-handed alpha
Helix 66
AH3
D
280 284Right-handed 310
Helix 67
AH4
D
286 295Right-handed alpha
Helix 68
AH5
D
297 302Right-handed alpha
Helix 69
AH6
D
311 314Right-handed 310
Helix 70
AH7
D
315 320Right-handed alpha
Helix 71
AH8
D
326 344Right-handed alpha
Helix 72
AH9
D
354 385Right-handed alpha
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There are 4 sheets in PDB entry 9KCU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 95first strand
Strand 2
A
99 102anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 95first strand
Strand 2
B
99 102anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
92 95first strand
Strand 2
C
99 102anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
92 94first strand
Strand 2
D
100 102anti-parallel
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