Analysis of interatomic Contacts of Structural Units in PDB entry:
9KCV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9KCV entry

There are 4 chains in PDB entry 9KCV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 58	GLN 577
B	ARG 58	GLN 577
C	ARG 58	GLN 577
D	ARG 58	GLN 577

There are103 helices in PDB entry 9KCV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	64	85	Right-handed alpha
Helix 2	AA2	A	86	90	Right-handed 310
Helix 3	AA3	A	103	129	Right-handed alpha
Helix 4	AA4	A	149	160	Right-handed alpha
Helix 5	AA5	A	161	168	Right-handed alpha
Helix 6	AA6	A	171	179	Right-handed alpha
Helix 7	AA7	A	179	184	Right-handed alpha
Helix 8	AA8	A	190	194	Right-handed 310
Helix 9	AA9	A	197	221	Right-handed alpha
Helix 10	AB1	A	229	270	Right-handed alpha
Helix 11	AB2	A	275	284	Right-handed 310
Helix 12	AB3	A	286	296	Right-handed alpha
Helix 13	AB4	A	297	302	Right-handed alpha
Helix 14	AB5	A	311	313	Right-handed 310
Helix 15	AB6	A	314	320	Right-handed alpha
Helix 16	AB7	A	326	344	Right-handed alpha
Helix 17	AB8	A	354	388	Right-handed alpha
Helix 18	AB9	A	388	407	Right-handed alpha
Helix 19	AC1	A	410	429	Right-handed alpha
Helix 20	AC2	A	432	440	Right-handed alpha
Helix 21	AC3	A	441	453	Right-handed alpha
Helix 22	AC4	A	454	459	Right-handed alpha
Helix 23	AC5	A	460	465	Right-handed alpha
Helix 24	AC6	A	467	478	Right-handed alpha
Helix 25	AC7	A	532	541	Right-handed alpha
Helix 26	AC8	A	567	577	Right-handed alpha
Helix 27	AC9	B	64	85	Right-handed alpha
Helix 28	AD1	B	86	90	Right-handed 310
Helix 29	AD2	B	103	130	Right-handed alpha
Helix 30	AD3	B	149	160	Right-handed alpha
Helix 31	AD4	B	161	168	Right-handed alpha
Helix 32	AD5	B	171	179	Right-handed alpha
Helix 33	AD6	B	190	194	Right-handed 310
Helix 34	AD7	B	197	221	Right-handed alpha
Helix 35	AD8	B	229	270	Right-handed alpha
Helix 36	AD9	B	271	274	Right-handed 310
Helix 37	AE1	B	276	284	Right-handed 310
Helix 38	AE2	B	286	296	Right-handed alpha
Helix 39	AE3	B	297	302	Right-handed alpha
Helix 40	AE4	B	311	313	Right-handed 310
Helix 41	AE5	B	314	320	Right-handed alpha
Helix 42	AE6	B	326	344	Right-handed alpha
Helix 43	AE7	B	354	388	Right-handed alpha
Helix 44	AE8	B	388	407	Right-handed alpha
Helix 45	AE9	B	410	429	Right-handed alpha
Helix 46	AF1	B	432	440	Right-handed alpha
Helix 47	AF2	B	441	453	Right-handed alpha
Helix 48	AF3	B	454	459	Right-handed alpha
Helix 49	AF4	B	467	476	Right-handed alpha
Helix 50	AF5	B	532	541	Right-handed alpha
Helix 51	AF6	B	567	577	Right-handed alpha
Helix 52	AF7	C	64	85	Right-handed alpha
Helix 53	AF8	C	86	90	Right-handed 310
Helix 54	AF9	C	103	130	Right-handed alpha
Helix 55	AG1	C	149	160	Right-handed alpha
Helix 56	AG2	C	161	167	Right-handed alpha
Helix 57	AG3	C	190	194	Right-handed 310
Helix 58	AG4	C	198	221	Right-handed alpha
Helix 59	AG5	C	229	270	Right-handed alpha
Helix 60	AG6	C	280	284	Right-handed 310
Helix 61	AG7	C	286	296	Right-handed alpha
Helix 62	AG8	C	297	302	Right-handed alpha
Helix 63	AG9	C	311	313	Right-handed 310
Helix 64	AH1	C	314	320	Right-handed alpha
Helix 65	AH2	C	321	325	Right-handed 310
Helix 66	AH3	C	326	344	Right-handed alpha
Helix 67	AH4	C	354	388	Right-handed alpha
Helix 68	AH5	C	388	408	Right-handed alpha
Helix 69	AH6	C	410	429	Right-handed alpha
Helix 70	AH7	C	432	439	Right-handed alpha
Helix 71	AH8	C	441	453	Right-handed alpha
Helix 72	AH9	C	454	459	Right-handed alpha
Helix 73	AI1	C	460	465	Right-handed alpha
Helix 74	AI2	C	467	478	Right-handed alpha
Helix 75	AI3	C	532	541	Right-handed alpha
Helix 76	AI4	C	567	577	Right-handed alpha
Helix 77	AI5	D	64	85	Right-handed alpha
Helix 78	AI6	D	86	90	Right-handed 310
Helix 79	AI7	D	103	130	Right-handed alpha
Helix 80	AI8	D	149	160	Right-handed alpha
Helix 81	AI9	D	161	168	Right-handed alpha
Helix 82	AJ1	D	171	176	Right-handed alpha
Helix 83	AJ2	D	190	194	Right-handed 310
Helix 84	AJ3	D	198	221	Right-handed alpha
Helix 85	AJ4	D	229	270	Right-handed alpha
Helix 86	AJ5	D	271	274	Right-handed 310
Helix 87	AJ6	D	275	284	Right-handed 310
Helix 88	AJ7	D	286	296	Right-handed alpha
Helix 89	AJ8	D	297	302	Right-handed alpha
Helix 90	AJ9	D	311	313	Right-handed 310
Helix 91	AK1	D	314	320	Right-handed alpha
Helix 92	AK2	D	321	325	Right-handed 310
Helix 93	AK3	D	326	344	Right-handed alpha
Helix 94	AK4	D	354	388	Right-handed alpha
Helix 95	AK5	D	388	407	Right-handed alpha
Helix 96	AK6	D	410	429	Right-handed alpha
Helix 97	AK7	D	432	439	Right-handed alpha
Helix 98	AK8	D	441	453	Right-handed alpha
Helix 99	AK9	D	454	459	Right-handed alpha
Helix 100	AL1	D	460	465	Right-handed alpha
Helix 101	AL2	D	467	478	Right-handed alpha
Helix 102	AL3	D	532	541	Right-handed alpha
Helix 103	AL4	D	568	577	Right-handed alpha

There are 12 sheets in PDB entry 9KCV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	95	first strand
Strand 2	A	99	102	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	481	483	first strand
Strand 2	A	561	564	anti-parallel
Strand 3	A	501	504	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	487	490	first strand
Strand 2	A	554	557	anti-parallel
Strand 3	A	507	510	anti-parallel
Strand 4	A	523	525	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	92	94	first strand
Strand 2	B	100	102	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	479	483	first strand
Strand 2	B	561	565	anti-parallel
Strand 3	B	501	504	anti-parallel
Strand 4	B	529	530	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	487	490	first strand
Strand 2	B	554	557	anti-parallel
Strand 3	B	507	510	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	92	94	first strand
Strand 2	C	100	102	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	479	483	first strand
Strand 2	C	561	565	anti-parallel
Strand 3	C	501	504	anti-parallel
Strand 4	C	529	530	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	487	490	first strand
Strand 2	C	554	557	anti-parallel
Strand 3	C	508	510	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	92	95	first strand
Strand 2	D	99	102	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	479	483	first strand
Strand 2	D	561	567	anti-parallel
Strand 3	D	498	504	anti-parallel
Strand 4	D	529	530	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	487	490	first strand
Strand 2	D	555	557	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9KCV

Analysis of interatomic Contacts of Structural Units in PDB entry:
9KCV