Analysis of interatomic Contacts of Structural Units in PDB entry:
9KD0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9KD0 entry

There is 1 chain in PDB entry 9KD0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 1GLU 271
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 3 helices in PDB entry 9KD0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 16Right-handed alpha
Helix 2
AA2
A
19 27Right-handed alpha
Helix 3
AA3
A
65 69Right-handed 310
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There are 4 sheets in PDB entry 9KD0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 7first strand
Strand 2
A
38 43parallel
Strand 3
A
48 53anti-parallel
Strand 4
A
127 133anti-parallel
Strand 5
A
77 83anti-parallel
Strand 6
A
104 107anti-parallel
Strand 7
A
141 144anti-parallel
Strand 8
A
152 153parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 29first strand
Strand 2
A
244 248anti-parallel
Strand 3
A
211 217anti-parallel
Strand 4
A
263 269anti-parallel
Strand 5
A
187 193anti-parallel
Strand 6
A
168 174anti-parallel
Strand 7
A
155 159anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 61first strand
Strand 2
A
114 118anti-parallel
Strand 3
A
88 92anti-parallel
Strand 4
A
95 99anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
234 240first strand
Strand 2
A
225 231anti-parallel
Strand 3
A
256 258anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il