Analysis of interatomic Contacts of Structural Units in PDB entry:
9KD2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9KD2 entry

There are 6 chains in PDB entry 9KD2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 3PRO 266
B
 ASN 2PRO 266
C
 PHE 4PRO 266
D
 PHE 4PRO 266
E
 GLN 3PRO 266
F
 PHE 4PRO 266
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 84 helices in PDB entry 9KD2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 34Right-handed alpha
Helix 2
AA2
A
44 57Right-handed alpha
Helix 3
AA3
A
71 86Right-handed alpha
Helix 4
AA4
A
103 107Right-handed 310
Helix 5
AA5
A
108 120Right-handed alpha
Helix 6
AA6
A
120 138Right-handed alpha
Helix 7
AA7
A
147 151Right-handed 310
Helix 8
AA8
A
157 179Right-handed alpha
Helix 9
AA9
A
198 203Right-handed 310
Helix 10
AB1
A
211 221Right-handed alpha
Helix 11
AB2
A
228 231Right-handed 310
Helix 12
AB3
A
232 241Right-handed alpha
Helix 13
AB4
A
242 245Right-handed 310
Helix 14
AB5
A
257 261Right-handed 310
Helix 15
AB6
B
21 34Right-handed alpha
Helix 16
AB7
B
44 57Right-handed alpha
Helix 17
AB8
B
71 86Right-handed alpha
Helix 18
AB9
B
103 107Right-handed 310
Helix 19
AC1
B
108 120Right-handed alpha
Helix 20
AC2
B
120 138Right-handed alpha
Helix 21
AC3
B
147 151Right-handed 310
Helix 22
AC4
B
157 179Right-handed alpha
Helix 23
AC5
B
198 203Right-handed 310
Helix 24
AC6
B
211 221Right-handed alpha
Helix 25
AC7
B
228 231Right-handed 310
Helix 26
AC8
B
232 241Right-handed alpha
Helix 27
AC9
B
242 245Right-handed 310
Helix 28
AD1
B
257 261Right-handed 310
Helix 29
AD2
C
21 34Right-handed alpha
Helix 30
AD3
C
44 58Right-handed alpha
Helix 31
AD4
C
71 86Right-handed alpha
Helix 32
AD5
C
103 107Right-handed 310
Helix 33
AD6
C
108 120Right-handed alpha
Helix 34
AD7
C
120 138Right-handed alpha
Helix 35
AD8
C
147 151Right-handed 310
Helix 36
AD9
C
157 179Right-handed alpha
Helix 37
AE1
C
198 203Right-handed 310
Helix 38
AE2
C
211 221Right-handed alpha
Helix 39
AE3
C
228 231Right-handed 310
Helix 40
AE4
C
232 241Right-handed alpha
Helix 41
AE5
C
242 245Right-handed 310
Helix 42
AE6
C
257 261Right-handed 310
Helix 43
AE7
D
21 34Right-handed alpha
Helix 44
AE8
D
44 57Right-handed alpha
Helix 45
AE9
D
71 86Right-handed alpha
Helix 46
AF1
D
103 107Right-handed 310
Helix 47
AF2
D
108 120Right-handed alpha
Helix 48
AF3
D
120 138Right-handed alpha
Helix 49
AF4
D
147 151Right-handed 310
Helix 50
AF5
D
157 179Right-handed alpha
Helix 51
AF6
D
195 203Right-handed 310
Helix 52
AF7
D
212 221Right-handed alpha
Helix 53
AF8
D
228 231Right-handed 310
Helix 54
AF9
D
232 241Right-handed alpha
Helix 55
AG1
D
242 245Right-handed 310
Helix 56
AG2
D
257 261Right-handed 310
Helix 57
AG3
E
21 34Right-handed alpha
Helix 58
AG4
E
44 57Right-handed alpha
Helix 59
AG5
E
71 86Right-handed alpha
Helix 60
AG6
E
103 107Right-handed 310
Helix 61
AG7
E
108 120Right-handed alpha
Helix 62
AG8
E
120 138Right-handed alpha
Helix 63
AG9
E
147 151Right-handed 310
Helix 64
AH1
E
157 179Right-handed alpha
Helix 65
AH2
E
195 203Right-handed 310
Helix 66
AH3
E
211 221Right-handed alpha
Helix 67
AH4
E
228 231Right-handed 310
Helix 68
AH5
E
232 241Right-handed alpha
Helix 69
AH6
E
242 245Right-handed 310
Helix 70
AH7
E
257 261Right-handed 310
Helix 71
AH8
F
21 34Right-handed alpha
Helix 72
AH9
F
44 57Right-handed alpha
Helix 73
AI1
F
71 86Right-handed alpha
Helix 74
AI2
F
103 107Right-handed 310
Helix 75
AI3
F
108 120Right-handed alpha
Helix 76
AI4
F
120 138Right-handed alpha
Helix 77
AI5
F
147 151Right-handed 310
Helix 78
AI6
F
157 179Right-handed alpha
Helix 79
AI7
F
195 203Right-handed 310
Helix 80
AI8
F
211 221Right-handed alpha
Helix 81
AI9
F
228 231Right-handed 310
Helix 82
AJ1
F
232 241Right-handed alpha
Helix 83
AJ2
F
242 245Right-handed 310
Helix 84
AJ3
F
257 261Right-handed 310
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There are 6 sheets in PDB entry 9KD2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 66first strand
Strand 2
A
37 42parallel
Strand 3
A
13 17parallel
Strand 4
A
91 94parallel
Strand 5
A
140 145parallel
Strand 6
A
183 190parallel
Strand 7
A
251 254parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
63 66first strand
Strand 2
B
37 42parallel
Strand 3
B
13 17parallel
Strand 4
B
91 94parallel
Strand 5
B
140 145parallel
Strand 6
B
183 190parallel
Strand 7
B
251 254parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
63 66first strand
Strand 2
C
37 42parallel
Strand 3
C
13 17parallel
Strand 4
C
91 94parallel
Strand 5
C
140 145parallel
Strand 6
C
183 190parallel
Strand 7
C
251 254parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
63 66first strand
Strand 2
D
37 42parallel
Strand 3
D
13 17parallel
Strand 4
D
91 94parallel
Strand 5
D
140 145parallel
Strand 6
D
183 190parallel
Strand 7
D
251 254parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
63 66first strand
Strand 2
E
37 42parallel
Strand 3
E
13 17parallel
Strand 4
E
91 94parallel
Strand 5
E
140 145parallel
Strand 6
E
183 190parallel
Strand 7
E
251 254parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
63 66first strand
Strand 2
F
37 42parallel
Strand 3
F
13 17parallel
Strand 4
F
91 94parallel
Strand 5
F
140 145parallel
Strand 6
F
183 190parallel
Strand 7
F
251 254parallel
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