Analysis of interatomic Contacts of Structural Units in PDB entry:
9KD6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9KD6 entry

There are 2 chains in PDB entry 9KD6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 20	LEU 526
B	ALA 20	LEU 526

There are 13 helices in PDB entry 9KD6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	76	83	Right-handed alpha
Helix 2	AA2	A	84	86	Right-handed 310
Helix 3	AA3	A	217	221	Right-handed 310
Helix 4	AA4	A	263	268	Right-handed 310
Helix 5	AA5	A	390	396	Right-handed alpha
Helix 6	AA6	A	448	455	Right-handed alpha
Helix 7	AA7	B	76	83	Right-handed alpha
Helix 8	AA8	B	84	86	Right-handed 310
Helix 9	AA9	B	123	128	Right-handed alpha
Helix 10	AB1	B	136	140	Right-handed 310
Helix 11	AB2	B	217	221	Right-handed 310
Helix 12	AB3	B	390	396	Right-handed alpha
Helix 13	AB4	B	448	454	Right-handed alpha

There are 15 sheets in PDB entry 9KD6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	36	first strand
Strand 2	A	195	197	anti-parallel
Strand 3	A	88	90	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	56	first strand
Strand 2	A	182	190	anti-parallel
Strand 3	A	93	98	anti-parallel
Strand 4	A	143	147	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	132	136	first strand
Strand 2	A	108	112	anti-parallel
Strand 3	A	167	171	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	441	444	first strand
Strand 2	A	422	425	anti-parallel
Strand 3	A	231	236	anti-parallel
Strand 4	A	500	502	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	250	251	first strand
Strand 2	A	255	256	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	428	429	first strand
Strand 2	A	338	348	parallel
Strand 3	A	363	367	anti-parallel
Strand 4	A	285	290	anti-parallel
Strand 5	A	270	278	anti-parallel
Strand 6	A	377	381	anti-parallel
Strand 7	A	324	331	parallel
Strand 8	A	338	348	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	427	429	first strand
Strand 2	B	337	348	parallel
Strand 3	B	363	367	anti-parallel
Strand 4	B	285	290	anti-parallel
Strand 5	B	270	278	anti-parallel
Strand 6	B	377	381	anti-parallel
Strand 7	B	326	331	parallel
Strand 8	B	337	348	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	489	490	first strand
Strand 2	A	477	483	anti-parallel
Strand 3	A	465	472	anti-parallel
Strand 4	A	506	514	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	36	first strand
Strand 2	B	195	197	anti-parallel
Strand 3	B	89	90	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	56	first strand
Strand 2	B	182	188	anti-parallel
Strand 3	B	93	98	anti-parallel
Strand 4	B	144	147	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	132	133	first strand
Strand 2	B	108	112	anti-parallel
Strand 3	B	167	171	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	234	236	first strand
Strand 2	B	500	502	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	250	251	first strand
Strand 2	B	255	256	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	423	425	first strand
Strand 2	B	441	443	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	489	490	first strand
Strand 2	B	477	483	anti-parallel
Strand 3	B	465	472	anti-parallel
Strand 4	B	508	514	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9KD6

Analysis of interatomic Contacts of Structural Units in PDB entry:
9KD6