Analysis of interatomic Contacts of Structural Units in PDB entry:
9KDG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9KDG entry

There are 2 chains in PDB entry 9KDG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 90LEU 1356
F
 GLY 4GLU 110
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 9KDG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
91 129Right-handed alpha
Helix 2
AA2
A
135 165Right-handed alpha
Helix 3
AA3
A
170 175Right-handed alpha
Helix 4
AA4
A
176 204Right-handed alpha
Helix 5
AA5
A
215 232Right-handed alpha
Helix 6
AA6
A
233 239Right-handed alpha
Helix 7
AA7
A
263 272Right-handed alpha
Helix 8
AA8
A
272 281Right-handed alpha
Helix 9
AA9
A
282 302Right-handed alpha
Helix 10
AB1
A
307 320Right-handed alpha
Helix 11
AB2
A
328 333Right-handed alpha
Helix 12
AB3
A
335 339Right-handed 310
Helix 13
AB4
A
343 352Right-handed alpha
Helix 14
AB5
A
361 370Right-handed alpha
Helix 15
AB6
A
376 389Right-handed alpha
Helix 16
AB7
A
397 410Right-handed alpha
Helix 17
AB8
A
414 430Right-handed alpha
Helix 18
AB9
A
438 447Right-handed alpha
Helix 19
AC1
A
450 454Right-handed 310
Helix 20
AC2
A
464 496Right-handed alpha
Helix 21
AC3
A
503 525Right-handed alpha
Helix 22
AC4
A
528 537Right-handed alpha
Helix 23
AC5
A
537 548Right-handed alpha
Helix 24
AC6
A
1015 1020Right-handed alpha
Helix 25
AC7
A
1027 1037Right-handed alpha
Helix 26
AC8
A
1042 1059Right-handed alpha
Helix 27
AC9
A
1079 1091Right-handed alpha
Helix 28
AD1
A
1110 1125Right-handed alpha
Helix 29
AD2
A
1138 1145Right-handed alpha
Helix 30
AD3
A
1146 1155Right-handed alpha
Helix 31
AD4
A
1156 1169Right-handed alpha
Helix 32
AD5
A
1194 1199Right-handed alpha
Helix 33
AD6
A
1210 1218Right-handed alpha
Helix 34
AD7
A
1246 1257Right-handed alpha
Helix 35
AD8
A
1295 1299Right-handed 310
Helix 36
AD9
A
1328 1332Right-handed 310
Helix 37
AE1
A
1333 1355Right-handed alpha
Helix 38
AE2
F
43 45Right-handed 310
Helix 39
AE3
F
59 68Right-handed alpha
Helix 40
AE4
F
81 84Right-handed 310
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There are 7 sheets in PDB entry 9KDG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
240 241first strand
Strand 2
A
256 257anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
326 327first strand
Strand 2
A
359 360anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1063 1066first strand
Strand 2
A
1173 1176parallel
Strand 3
A
1180 1183anti-parallel
Strand 4
A
1261 1264parallel
Strand 5
A
1287 1290parallel
Strand 6
A
1273 1275anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1129 1131first strand
Strand 2
A
1098 1100parallel
Strand 3
A
1070 1073parallel
Strand 4
A
1304 1310anti-parallel
Strand 5
A
1313 1319anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1219 1220first strand
Strand 2
A
1243 1245parallel
Strand 3
A
1233 1235anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
5 11first strand
Strand 2
F
74 79anti-parallel
Strand 3
F
100 110anti-parallel
Strand 4
F
24 33anti-parallel
Strand 5
F
38 41anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
5 11first strand
Strand 2
F
74 79anti-parallel
Strand 3
F
100 110anti-parallel
Strand 4
F
24 33anti-parallel
Strand 5
F
49 52anti-parallel
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