Analysis of interatomic Contacts of Structural Units in PDB entry:
9KE1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9KE1 entry

There are 2 chains in PDB entry 9KE1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 0SER 373
B
 MET 0ALA 372
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 9KE1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 16Right-handed 310
Helix 2
AA2
A
17 27Right-handed alpha
Helix 3
AA3
A
41 45Right-handed 310
Helix 4
AA4
A
57 65Right-handed alpha
Helix 5
AA5
A
85 95Right-handed alpha
Helix 6
AA6
A
97 109Right-handed alpha
Helix 7
AA7
A
120 130Right-handed alpha
Helix 8
AA8
A
142 153Right-handed alpha
Helix 9
AA9
A
154 161Right-handed alpha
Helix 10
AB1
A
200 205Right-handed 310
Helix 11
AB2
A
219 223Right-handed 310
Helix 12
AB3
A
226 228Right-handed 310
Helix 13
AB4
A
229 237Right-handed alpha
Helix 14
AB5
A
252 256Right-handed 310
Helix 15
AB6
A
269 275Right-handed alpha
Helix 16
AB7
A
285 296Right-handed alpha
Helix 17
AB8
A
307 317Right-handed alpha
Helix 18
AB9
A
325 329Right-handed 310
Helix 19
AC1
A
330 340Right-handed alpha
Helix 20
AC2
A
340 356Right-handed alpha
Helix 21
AC3
A
359 372Right-handed alpha
Helix 22
AC4
B
10 16Right-handed 310
Helix 23
AC5
B
17 27Right-handed alpha
Helix 24
AC6
B
41 45Right-handed 310
Helix 25
AC7
B
57 67Right-handed alpha
Helix 26
AC8
B
78 95Right-handed alpha
Helix 27
AC9
B
97 109Right-handed alpha
Helix 28
AD1
B
120 130Right-handed alpha
Helix 29
AD2
B
142 153Right-handed alpha
Helix 30
AD3
B
154 161Right-handed alpha
Helix 31
AD4
B
200 205Right-handed 310
Helix 32
AD5
B
220 225Right-handed alpha
Helix 33
AD6
B
226 228Right-handed 310
Helix 34
AD7
B
229 237Right-handed alpha
Helix 35
AD8
B
252 256Right-handed 310
Helix 36
AD9
B
269 275Right-handed alpha
Helix 37
AE1
B
285 296Right-handed alpha
Helix 38
AE2
B
307 317Right-handed alpha
Helix 39
AE3
B
325 329Right-handed 310
Helix 40
AE4
B
330 340Right-handed alpha
Helix 41
AE5
B
340 356Right-handed alpha
Helix 42
AE6
B
359 372Right-handed alpha
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There are 4 sheets in PDB entry 9KE1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 187first strand
Strand 2
A
170 173parallel
Strand 3
A
133 136parallel
Strand 4
A
112 115parallel
Strand 5
A
2 6parallel
Strand 6
A
30 35parallel
Strand 7
A
48 51parallel
Strand 8
B
197 198parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
197 198first strand
Strand 2
B
48 51parallel
Strand 3
B
30 35parallel
Strand 4
B
2 6parallel
Strand 5
B
112 115parallel
Strand 6
B
133 136parallel
Strand 7
B
170 173parallel
Strand 8
B
186 187parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 265first strand
Strand 2
A
242 246parallel
Strand 3
A
211 215parallel
Strand 4
A
279 282parallel
Strand 5
A
299 301parallel
Strand 6
A
321 323parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
262 264first strand
Strand 2
B
242 246parallel
Strand 3
B
211 215parallel
Strand 4
B
279 282parallel
Strand 5
B
299 301parallel
Strand 6
B
321 323parallel
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