Analysis of interatomic Contacts of Structural Units in PDB entry:
9KE8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9KE8 entry

There are 2 chains in PDB entry 9KE8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 5SER 491
B
 LEU 5THR 493
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 9KE8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 18Right-handed 310
Helix 2
AA2
A
22 27Right-handed alpha
Helix 3
AA3
A
28 30Right-handed 310
Helix 4
AA4
A
59 67Right-handed alpha
Helix 5
AA5
A
69 76Right-handed alpha
Helix 6
AA6
A
81 97Right-handed alpha
Helix 7
AA7
A
102 112Right-handed alpha
Helix 8
AA8
A
140 142Right-handed 310
Helix 9
AA9
A
143 150Right-handed alpha
Helix 10
AB1
A
150 183Right-handed alpha
Helix 11
AB2
A
188 192Right-handed alpha
Helix 12
AB3
A
197 201Right-handed 310
Helix 13
AB4
A
203 218Right-handed alpha
Helix 14
AB5
A
223 234Right-handed alpha
Helix 15
AB6
A
248 255Right-handed alpha
Helix 16
AB7
A
258 270Right-handed alpha
Helix 17
AB8
A
283 290Right-handed alpha
Helix 18
AB9
A
290 302Right-handed alpha
Helix 19
AC1
A
303 306Right-handed 310
Helix 20
AC2
A
316 323Right-handed alpha
Helix 21
AC3
A
329 334Right-handed alpha
Helix 22
AC4
A
335 344Right-handed alpha
Helix 23
AC5
A
369 383Right-handed alpha
Helix 24
AC6
A
386 390Right-handed 310
Helix 25
AC7
A
395 400Right-handed alpha
Helix 26
AC8
A
480 491Right-handed alpha
Helix 27
AC9
B
14 18Right-handed 310
Helix 28
AD1
B
20 30Right-handed 310
Helix 29
AD2
B
59 67Right-handed alpha
Helix 30
AD3
B
69 76Right-handed alpha
Helix 31
AD4
B
80 95Right-handed alpha
Helix 32
AD5
B
102 112Right-handed alpha
Helix 33
AD6
B
140 144Right-handed 310
Helix 34
AD7
B
145 150Right-handed alpha
Helix 35
AD8
B
150 183Right-handed alpha
Helix 36
AD9
B
188 192Right-handed alpha
Helix 37
AE1
B
197 201Right-handed 310
Helix 38
AE2
B
203 218Right-handed alpha
Helix 39
AE3
B
223 234Right-handed alpha
Helix 40
AE4
B
248 255Right-handed alpha
Helix 41
AE5
B
258 270Right-handed alpha
Helix 42
AE6
B
283 290Right-handed alpha
Helix 43
AE7
B
290 301Right-handed alpha
Helix 44
AE8
B
303 306Right-handed 310
Helix 45
AE9
B
316 323Right-handed alpha
Helix 46
AF1
B
329 344Right-handed alpha
Helix 47
AF2
B
369 383Right-handed alpha
Helix 48
AF3
B
386 390Right-handed 310
Helix 49
AF4
B
395 400Right-handed alpha
Helix 50
AF5
B
480 493Right-handed alpha
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There are 11 sheets in PDB entry 9KE8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 11first strand
Strand 2
B
7 11anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
421 424first strand
Strand 2
A
409 418anti-parallel
Strand 3
A
34 43anti-parallel
Strand 4
A
134 138anti-parallel
Strand 5
A
116 120anti-parallel
Strand 6
A
467 471anti-parallel
Strand 7
A
474 475anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 56first strand
Strand 2
A
126 128anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 195first strand
Strand 2
A
391 394parallel
Strand 3
A
360 364parallel
Strand 4
A
308 311parallel
Strand 5
A
275 278parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
346 348first strand
Strand 2
A
354 356anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
442 447first strand
Strand 2
A
450 455anti-parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
421 424first strand
Strand 2
B
409 418anti-parallel
Strand 3
B
34 43anti-parallel
Strand 4
B
134 138anti-parallel
Strand 5
B
116 120anti-parallel
Strand 6
B
467 471anti-parallel
Strand 7
B
474 475anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 56first strand
Strand 2
B
126 127anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
193 195first strand
Strand 2
B
391 394parallel
Strand 3
B
360 364parallel
Strand 4
B
308 311parallel
Strand 5
B
275 278parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
346 348first strand
Strand 2
B
354 356anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
442 447first strand
Strand 2
B
450 455anti-parallel
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