Analysis of interatomic Contacts of Structural Units in PDB entry:
9KED

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9KED entry

There are 3 chains in PDB entry 9KED (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 1	ILE 514
B	ASP 1	ILE 514
C	ASP 1	ILE 514

There are 30 helices in PDB entry 9KED. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	61	67	Right-handed alpha
Helix 2	AA2	A	98	102	Right-handed 310
Helix 3	AA3	A	103	105	Right-handed 310
Helix 4	AA4	A	106	112	Right-handed alpha
Helix 5	AA5	A	194	202	Right-handed alpha
Helix 6	AA6	A	379	399	Right-handed alpha
Helix 7	AA7	A	400	402	Right-handed 310
Helix 8	AA8	A	416	467	Right-handed alpha
Helix 9	AA9	A	487	497	Right-handed alpha
Helix 10	AB1	A	500	505	Right-handed 310
Helix 11	AB2	B	61	67	Right-handed alpha
Helix 12	AB3	B	98	102	Right-handed 310
Helix 13	AB4	B	103	105	Right-handed 310
Helix 14	AB5	B	106	112	Right-handed alpha
Helix 15	AB6	B	194	202	Right-handed alpha
Helix 16	AB7	B	380	399	Right-handed alpha
Helix 17	AB8	B	400	402	Right-handed 310
Helix 18	AB9	B	416	467	Right-handed alpha
Helix 19	AC1	B	487	497	Right-handed alpha
Helix 20	AC2	B	501	505	Right-handed 310
Helix 21	AC3	C	61	67	Right-handed alpha
Helix 22	AC4	C	98	102	Right-handed 310
Helix 23	AC5	C	103	105	Right-handed 310
Helix 24	AC6	C	106	112	Right-handed alpha
Helix 25	AC7	C	194	202	Right-handed alpha
Helix 26	AC8	C	379	399	Right-handed alpha
Helix 27	AC9	C	400	402	Right-handed 310
Helix 28	AD1	C	416	467	Right-handed alpha
Helix 29	AD2	C	487	497	Right-handed alpha
Helix 30	AD3	C	500	505	Right-handed 310

There are 32 sheets in PDB entry 9KED. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	374	376	first strand
Strand 2	A	365	369	anti-parallel
Strand 3	A	2	6	anti-parallel
Strand 4	A	479	481	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	14	17	first strand
Strand 2	A	23	26	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	31	first strand
Strand 2	A	328	330	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	44	first strand
Strand 2	A	290	291	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	50	first strand
Strand 2	A	81	83	parallel
Strand 3	A	279	280	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	114	119	first strand
Strand 2	A	271	276	anti-parallel
Strand 3	A	183	192	anti-parallel
Strand 4	A	264	267	anti-parallel
Strand 5	A	156	160	anti-parallel
Strand 6	A	136	137	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	114	119	first strand
Strand 2	A	271	276	anti-parallel
Strand 3	A	183	192	anti-parallel
Strand 4	A	242	250	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	140	144	first strand
Strand 2	A	150	151	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	170	175	first strand
Strand 2	A	255	260	anti-parallel
Strand 3	A	210	214	anti-parallel
Strand 4	A	217	221	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	299	301	first strand
Strand 2	A	293	295	anti-parallel
Strand 3	A	315	317	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	307	308	first strand
Strand 2	A	321	322	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	374	376	first strand
Strand 2	B	365	369	anti-parallel
Strand 3	B	2	6	anti-parallel
Strand 4	B	480	481	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	14	17	first strand
Strand 2	B	23	26	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	31	first strand
Strand 2	B	328	330	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	43	44	first strand
Strand 2	B	290	291	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	50	first strand
Strand 2	B	81	84	parallel
Strand 3	B	279	281	parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	114	119	first strand
Strand 2	B	271	276	anti-parallel
Strand 3	B	183	192	anti-parallel
Strand 4	B	264	267	anti-parallel
Strand 5	B	156	160	anti-parallel
Strand 6	B	136	137	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	114	119	first strand
Strand 2	B	271	276	anti-parallel
Strand 3	B	183	192	anti-parallel
Strand 4	B	242	250	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	140	144	first strand
Strand 2	B	150	151	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	170	175	first strand
Strand 2	B	255	260	anti-parallel
Strand 3	B	210	214	anti-parallel
Strand 4	B	217	221	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	299	301	first strand
Strand 2	B	293	295	anti-parallel
Strand 3	B	315	317	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	307	308	first strand
Strand 2	B	321	322	parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	374	376	first strand
Strand 2	C	365	369	anti-parallel
Strand 3	C	2	6	anti-parallel
Strand 4	C	479	481	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	14	17	first strand
Strand 2	C	23	26	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	31	first strand
Strand 2	C	328	330	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	44	first strand
Strand 2	C	290	291	parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	49	50	first strand
Strand 2	C	81	84	parallel
Strand 3	C	279	281	parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	114	119	first strand
Strand 2	C	271	276	anti-parallel
Strand 3	C	183	192	anti-parallel
Strand 4	C	264	267	anti-parallel
Strand 5	C	156	160	anti-parallel
Strand 6	C	136	137	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	114	119	first strand
Strand 2	C	271	276	anti-parallel
Strand 3	C	183	192	anti-parallel
Strand 4	C	242	250	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	170	175	first strand
Strand 2	C	255	260	anti-parallel
Strand 3	C	210	214	anti-parallel
Strand 4	C	217	221	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	299	301	first strand
Strand 2	C	293	295	anti-parallel
Strand 3	C	315	317	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	307	308	first strand
Strand 2	C	321	322	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9KED

Analysis of interatomic Contacts of Structural Units in PDB entry:
9KED