Analysis of interatomic Contacts of Structural Units in PDB entry:
9KEN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9KEN entry

There are 3 chains in PDB entry 9KEN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 MET 1GLY 76
D
 MET 1ARG 74
A
 LEU 442GLY 1985
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 68 helices in PDB entry 9KEN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
22 27Right-handed alpha
Helix 2
AA2
C
27 35Right-handed alpha
Helix 3
AA3
D
24 29Right-handed alpha
Helix 4
AA4
A
450 467Right-handed alpha
Helix 5
AA5
A
477 491Right-handed alpha
Helix 6
AA6
A
494 512Right-handed alpha
Helix 7
AA7
A
515 520Right-handed alpha
Helix 8
AA8
A
522 532Right-handed alpha
Helix 9
AA9
A
535 548Right-handed alpha
Helix 10
AB1
A
553 560Right-handed alpha
Helix 11
AB2
A
561 567Right-handed alpha
Helix 12
AB3
A
574 589Right-handed alpha
Helix 13
AB4
A
593 595Right-handed 310
Helix 14
AB5
A
596 611Right-handed alpha
Helix 15
AB6
A
615 630Right-handed alpha
Helix 16
AB7
A
636 644Right-handed alpha
Helix 17
AB8
A
647 657Right-handed alpha
Helix 18
AB9
A
667 680Right-handed alpha
Helix 19
AC1
A
682 692Right-handed alpha
Helix 20
AC2
A
693 703Right-handed alpha
Helix 21
AC3
A
722 730Right-handed alpha
Helix 22
AC4
A
731 734Right-handed 310
Helix 23
AC5
A
742 745Right-handed 310
Helix 24
AC6
A
746 751Right-handed alpha
Helix 25
AC7
A
818 827Right-handed alpha
Helix 26
AC8
A
827 849Right-handed alpha
Helix 27
AC9
A
853 869Right-handed alpha
Helix 28
AD1
A
870 878Right-handed alpha
Helix 29
AD2
A
879 881Right-handed 310
Helix 30
AD3
A
882 892Right-handed alpha
Helix 31
AD4
A
896 913Right-handed alpha
Helix 32
AD5
A
925 936Right-handed alpha
Helix 33
AD6
A
1082 1105Right-handed alpha
Helix 34
AD7
A
1118 1126Right-handed alpha
Helix 35
AD8
A
1138 1148Right-handed alpha
Helix 36
AD9
A
1164 1172Right-handed alpha
Helix 37
AE1
A
1181 1193Right-handed alpha
Helix 38
AE2
A
1212 1230Right-handed alpha
Helix 39
AE3
A
1449 1454Right-handed alpha
Helix 40
AE4
A
1468 1484Right-handed alpha
Helix 41
AE5
A
1485 1488Right-handed 310
Helix 42
AE6
A
1505 1517Right-handed alpha
Helix 43
AE7
A
1518 1525Right-handed alpha
Helix 44
AE8
A
1528 1538Right-handed alpha
Helix 45
AE9
A
1539 1542Right-handed 310
Helix 46
AF1
A
1543 1555Right-handed alpha
Helix 47
AF2
A
1559 1569Right-handed alpha
Helix 48
AF3
A
1597 1606Right-handed alpha
Helix 49
AF4
A
1627 1642Right-handed alpha
Helix 50
AF5
A
1686 1694Right-handed alpha
Helix 51
AF6
A
1695 1710Right-handed alpha
Helix 52
AF7
A
1719 1727Right-handed alpha
Helix 53
AF8
A
1729 1733Right-handed 310
Helix 54
AF9
A
1734 1739Right-handed alpha
Helix 55
AG1
A
1744 1764Right-handed alpha
Helix 56
AG2
A
1781 1785Right-handed 310
Helix 57
AG3
A
1786 1791Right-handed alpha
Helix 58
AG4
A
1807 1811Right-handed 310
Helix 59
AG5
A
1817 1831Right-handed alpha
Helix 60
AG6
A
1834 1846Right-handed alpha
Helix 61
AG7
A
1852 1857Right-handed 310
Helix 62
AG8
A
1862 1867Right-handed alpha
Helix 63
AG9
A
1875 1883Right-handed alpha
Helix 64
AH1
A
1893 1904Right-handed alpha
Helix 65
AH2
A
1909 1919Right-handed alpha
Helix 66
AH3
A
1927 1932Right-handed 310
Helix 67
AH4
A
1948 1952Right-handed 310
Helix 68
AH5
A
1970 1984Right-handed alpha
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There are 5 sheets in PDB entry 9KEN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
13 15first strand
Strand 2
C
3 5anti-parallel
Strand 3
C
66 71parallel
Strand 4
C
41 45anti-parallel
Strand 5
C
48 49anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
13 16first strand
Strand 2
D
2 5anti-parallel
Strand 3
D
66 71parallel
Strand 4
D
41 45anti-parallel
Strand 5
D
48 49anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1588 1590first strand
Strand 2
A
1615 1617parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1653 1654first strand
Strand 2
A
1670 1671anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1884 1886first strand
Strand 2
A
1937 1939parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il