Analysis of interatomic Contacts of Structural Units in PDB entry:
9KF4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9KF4 entry

There is 1 chain in PDB entry 9KF4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 51ARG 513
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 9KF4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
92 97Right-handed alpha
Helix 2
AA2
A
231 233Right-handed 310
Helix 3
AA3
A
235 239Right-handed 310
Helix 4
AA4
A
464 468Right-handed 310
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There are 9 sheets in PDB entry 9KF4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 72first strand
Strand 2
A
402 408anti-parallel
Strand 3
A
392 396anti-parallel
Strand 4
A
383 386anti-parallel
Strand 5
A
374 377anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
110 113first strand
Strand 2
A
102 104anti-parallel
Strand 3
A
80 83anti-parallel
Strand 4
A
419 421anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 132first strand
Strand 2
A
135 145anti-parallel
Strand 3
A
151 158anti-parallel
Strand 4
A
164 168anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 184first strand
Strand 2
A
189 202anti-parallel
Strand 3
A
205 218anti-parallel
Strand 4
A
224 229anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
258 259first strand
Strand 2
A
265 269anti-parallel
Strand 3
A
274 278anti-parallel
Strand 4
A
285 289anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
297 298first strand
Strand 2
A
354 362parallel
Strand 3
A
342 349anti-parallel
Strand 4
A
318 322anti-parallel
Strand 5
A
308 312anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
432 437first strand
Strand 2
A
442 447anti-parallel
Strand 3
A
481 485anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
469 475first strand
Strand 2
A
456 462anti-parallel
Strand 3
A
491 497anti-parallel
Strand 4
A
503 506anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
469 475first strand
Strand 2
A
456 462anti-parallel
Strand 3
A
491 497anti-parallel
Strand 4
A
510 511anti-parallel
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