Analysis of interatomic Contacts of Structural Units in PDB entry:
9KFD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9KFD entry

There are 2 chains in PDB entry 9KFD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 82ASP 855
B
 SER 85ASP 853
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 9KFD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
82 120Right-handed alpha
Helix 2
AA2
A
157 185Right-handed alpha
Helix 3
AA3
A
199 209Right-handed alpha
Helix 4
AA4
A
245 247Right-handed 310
Helix 5
AA5
A
249 257Right-handed alpha
Helix 6
AA6
A
269 271Right-handed 310
Helix 7
AA7
A
272 277Right-handed alpha
Helix 8
AA8
A
320 332Right-handed alpha
Helix 9
AA9
A
348 359Right-handed alpha
Helix 10
AB1
A
377 393Right-handed alpha
Helix 11
AB2
A
393 399Right-handed alpha
Helix 12
AB3
A
399 403Right-handed alpha
Helix 13
AB4
A
442 459Right-handed alpha
Helix 14
AB5
A
459 464Right-handed alpha
Helix 15
AB6
A
465 491Right-handed alpha
Helix 16
AB7
A
816 849Right-handed alpha
Helix 17
AB8
B
86 120Right-handed alpha
Helix 18
AB9
B
157 185Right-handed alpha
Helix 19
AC1
B
199 209Right-handed alpha
Helix 20
AC2
B
231 234Right-handed 310
Helix 21
AC3
B
249 257Right-handed alpha
Helix 22
AC4
B
272 277Right-handed alpha
Helix 23
AC5
B
320 332Right-handed alpha
Helix 24
AC6
B
348 359Right-handed alpha
Helix 25
AC7
B
371 375Right-handed 310
Helix 26
AC8
B
377 393Right-handed alpha
Helix 27
AC9
B
393 398Right-handed alpha
Helix 28
AD1
B
399 403Right-handed alpha
Helix 29
AD2
B
442 458Right-handed alpha
Helix 30
AD3
B
459 464Right-handed alpha
Helix 31
AD4
B
465 491Right-handed alpha
Helix 32
AD5
B
815 849Right-handed alpha
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There are 3 sheets in PDB entry 9KFD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 142first strand
Strand 2
B
140 143anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
266 268first strand
Strand 2
A
238 243anti-parallel
Strand 3
A
283 290anti-parallel
Strand 4
A
224 229parallel
Strand 5
A
309 313anti-parallel
Strand 6
A
188 194parallel
Strand 7
A
336 342parallel
Strand 8
A
366 370parallel
Strand 9
A
404 406parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
266 268first strand
Strand 2
B
239 243anti-parallel
Strand 3
B
283 290anti-parallel
Strand 4
B
224 229parallel
Strand 5
B
309 313anti-parallel
Strand 6
B
188 194parallel
Strand 7
B
336 342parallel
Strand 8
B
366 370parallel
Strand 9
B
404 406parallel
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